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Syngr1
Gene Detail
Symbol

Name
ID
Syngr1
synaptogyrin 1
MGI:1328323
Synonyms
p29, Syngr1b
Feature Type
protein coding gene
Genetic Map
Chromosome 15
37.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:80091334-80119501 bp, + strand
From VEGA annotation of GRCm38

  28168 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3456  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SYNGR1
Protein SuperFamily: synaptogyrin
Gene Tree: Syngr1

Human
homologs
SYNGR1, synaptogyrin 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 9145
neXtProt AC: NX_O43759

Human Chr (Location): 22q13.1; chr22:39349949-39385588 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(69) : Gene trapped(65) Radiation induced(1) Targeted(3)
Genomic Mutations involving Syngr1 (1)
Incidental mutations (data from CvDC )
 
Mice homozygous for a knock-out allele exhibit a moderate decrease in post-tetanic potentiation.
 
Phenotype Images(2)
Interactions
Syngr1 interacts with 283 markers (Mir10a, Mir10b, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process protein targeting, regulation of long-term neuronal synaptic plasticity, ...
Component cell junction, integral component of membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (98)    Tissues (49)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 90
Northern blot 8
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase syngr1 ; ZFIN syngr1a    NEW 
Molecular
reagents
All nucleic(20) cDNA(17) Other(3)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000016389 (Evidence)
Ensembl Gene Model ENSMUSG00000022415 (Evidence)
Entrez Gene 20972 (Evidence)
DFCI TC1759575, TC1597698, TC1655125, TC1587342, TC1577475
DoTS DT.110824906, DT.110824920, DT.110824888, DT.529515, DT.110824956, DT.94139623, DT.91375445, DT.97369136, DT.99859616
NIA Mouse Gene Index U016441
Consensus CDS Project CCDS27657.1, CCDS27658.1
International Mouse Phenotyping Consortium Status Syngr1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016389 VEGA Gene Model | MGI Sequence Detail 28168 C57BL/6J ±  kb
transcript OTTMUST00000039471 VEGA | MGI Sequence Detail 4180 Not Applicable 
polypeptide OTTMUSP00000017634 VEGA | MGI Sequence Detail 234 Not Applicable 

For the selected sequences
All sequences(77) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(176 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008253 Marvel
InterPro IPR016579 Synaptogyrin
Protein Ontology PR:000015878 synaptogyrin-1
References
(Earliest) J:50126 Kedra D, et al., Characterization of the human synaptogyrin gene family. Hum Genet. 1998 Aug;103(2):131-41
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:2146324

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory