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Syngr1
Gene Detail
 Symbol
Name
ID
Syngr1
synaptogyrin 1
MGI:1328323
Synonyms p29, Syngr1b
Feature Type protein coding gene
Genetic Map
Chromosome 15
37.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:80091334-80119501 bp, + strand
From VEGA annotation of GRCm38

  28168 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3456  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: synaptogyrin
Gene Tree: Syngr1

Human
homologs
Human Homolog SYNGR1, synaptogyrin 1
NCBI Gene ID 9145
neXtProt AC  NX_O43759
Human Chr (Location)  22q13.1; chr22:39349949-39385588 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(69) : Gene trapped(65) Radiation induced(1) Targeted(3)
Genomic Mutations involving Syngr1 (1)
 
Mice homozygous for a knock-out allele exhibit a moderate decrease in post-tetanic potentiation.
 
Interactions
Syngr1 interacts with 283 markers (Mir10a, Mir10b, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process protein targeting, regulation of long-term neuronal synaptic plasticity, ...
Component cell junction, integral component of membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (98)    Tissues (49)    Images (2)
Theiler Stages: 22, 23, 25, 28
Assay TypeResults
RNA in situ 90
Northern blot 8
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(20) cDNA(17) Other(3)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000016389 (Evidence)
Ensembl Gene ModelENSMUSG00000022415 (Evidence)
Entrez Gene20972 (Evidence)
DFCITC1577475, TC1587342, TC1597698, TC1655125, TC1759575
DoTSDT.110824888, DT.110824906, DT.110824920, DT.110824956, DT.529515, DT.91375445, DT.94139623, DT.97369136, DT.99859616
NIA Mouse Gene IndexU016441
Consensus CDS ProjectCCDS27657.1, CCDS27658.1
International Mouse Knockout Project StatusSyngr1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016389 VEGA Gene Model | MGI Sequence Detail 28168 C57BL/6J ±  kb
transcript OTTMUST00000039471 VEGA | MGI Sequence Detail 4180 Not Applicable 
polypeptide OTTMUSP00000017634 VEGA | MGI Sequence Detail 234 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(6) UniProt(4)
Polymorphisms SNPs within 2kb(176 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008253 Marvel
InterPro IPR016579 Synaptogyrin
Protein Ontology PR:000015878 synaptogyrin-1
References (Earliest) J:50126 Kedra D, et al., Characterization of the human synaptogyrin gene family. Hum Genet. 1998 Aug;103(2):131-41
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:2146324

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory