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Ifrd1 Gene Detail
Summary
  • Symbol
    Ifrd1
  • Name
    interferon-related developmental regulator 1
  • Synonyms
    Ifnl, PC4, Tis7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1316717
    NCBI Gene: 15982
  • Gene Overview
    MyGene.info: IFRD1
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:40203129-40223189 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 18.06 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316717
protein coding gene Chr12:40201567-40248504 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019702
protein coding gene Chr12:38614141-38662166 (-)
A/J MGP_AJ_G0019668
protein coding gene Chr12:37347757-37394638 (-)
AKR/J MGP_AKRJ_G0019639
protein coding gene Chr12:38475776-38523017 (-)
BALB/cJ MGP_BALBcJ_G0019646
protein coding gene Chr12:37562437-37609511 (-)
C3H/HeJ MGP_C3HHeJ_G0019450
protein coding gene Chr12:38413210-38461896 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020093
protein coding gene Chr12:39778526-39826057 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017718
protein coding gene Chr12:36478437-36524802 (-)
CAST/EiJ MGP_CASTEiJ_G0019003
protein coding gene Chr12:33598822-33647244 (-)
CBA/J MGP_CBAJ_G0019422
protein coding gene Chr12:41130807-41178944 (-)
DBA/2J MGP_DBA2J_G0019535
protein coding gene Chr12:37205293-37252713 (-)
FVB/NJ MGP_FVBNJ_G0019524
protein coding gene Chr12:36834705-36881339 (-)
LP/J MGP_LPJ_G0019605
protein coding gene Chr12:38598149-38647133 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019560
protein coding gene Chr12:41287848-41339102 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020133
protein coding gene Chr12:38034916-38082640 (-)
PWK/PhJ MGP_PWKPhJ_G0018770
protein coding gene Chr12:31882232-31930052 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018560
protein coding gene Chr12:32689469-32737674 (-)
WSB/EiJ MGP_WSBEiJ_G0019053
protein coding gene Chr12:38342604-38392148 (-)



Homology
more
  • Human Ortholog
    IFRD1, interferon related developmental regulator 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    IFRD1, interferon related developmental regulator 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PC4, TIS7
  • Links
    NCBI Gene ID: 3475
    neXtProt AC: NX_O00458
    UniProt: O00458

  • Chr Location
    7q31.1; chr7:112423144-112477203 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 31043
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: IFRD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous null mice display impaired muscle regeneration and myogenic differentiation and decreased body weight in older mice.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 15982 NCBI Gene Model | MGI Sequence Detail 20061 C57BL/6J ±  kb
    transcript NM_013562 RefSeq | MGI Sequence Detail 1836 C57BL/6  
    polypeptide P19182 UniProt | EBI | MGI Sequence Detail 449 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 155
      cDNA 154
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-37140, MGI:108103
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 3
      Gene Ontology 7
      Phenotypes 9
    • Earliest
      J:6817 Skup D, et al., Molecular cloning of partial cDNA copies of two distinct mouse IFN-beta mRNAs. Nucleic Acids Res. 1982 May 25;10(10):3069-84
    • Latest
      J:223121 Garcia AM, et al., Tis7 deletion reduces survival and induces intestinal anastomotic inflammation and obstruction in high-fat diet-fed mice with short bowel syndrome. Am J Physiol Gastrointest Liver Physiol. 2014 Sep 15;307(6):G642-54

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory