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Ifrd2 Gene Detail
Summary
  • Symbol
    Ifrd2
  • Name
    interferon-related developmental regulator 2
  • Synonyms
    1810034A24Rik, SKMc15
  • Feature Type
    protein coding gene
  • IDs
    MGI:1316708
    NCBI Gene: 15983
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107587718-107593038 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 58.24 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316708
 protein coding gene Chr9:107587642-107593385 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035263
 protein coding gene Chr9:109472445-109478231 (+)
A/J MGP_AJ_G0035242
 protein coding gene Chr9:105484511-105491072 (+)
AKR/J MGP_AKRJ_G0035174
 protein coding gene Chr9:108118238-108124056 (+)
BALB/cJ MGP_BALBcJ_G0035236
 protein coding gene Chr9:105153964-105159771 (+)
C3H/HeJ MGP_C3HHeJ_G0034946
 protein coding gene Chr9:108515847-108522185 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035756
 protein coding gene Chr9:112454623-112460331 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032654
 protein coding gene Chr9:102914179-102919751 (+)
CAST/EiJ MGP_CASTEiJ_G0034257
 protein coding gene Chr9:108450317-108456100 (+)
CBA/J MGP_CBAJ_G0034914
 protein coding gene Chr9:116428476-116434096 (+)
DBA/2J MGP_DBA2J_G0035075
 protein coding gene Chr9:104938311-104944054 (+)
FVB/NJ MGP_FVBNJ_G0035023
 protein coding gene Chr9:103704201-103710479 (+)
LP/J MGP_LPJ_G0035151
 protein coding gene Chr9:109670218-109676023 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035062
 protein coding gene Chr9:118041763-118048613 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035777
 protein coding gene Chr9:108392279-108398061 (+)
PWK/PhJ MGP_PWKPhJ_G0033964
 protein coding gene Chr9:105258928-105264772 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033799
 protein coding gene Chr9:108443887-108449639 (+)
WSB/EiJ MGP_WSBEiJ_G0034378
 protein coding gene Chr9:108272122-108277925 (+)



Homology
more
  • Human Ortholog
    IFRD2, interferon related developmental regulator 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    IFRD2, interferon related developmental regulator 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IFNRP, SKMc15, SM15
  • Links
    NCBI Gene ID: 7866
    neXtProt AC: NX_Q12894
    UniProt: Q12894

  • Chr Location
    3p21.31; chr3:50287732-50292595 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    677
  • Tissues
    28
  • cDNA Data
    13
  • Literature Summary
    3
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 15983 NCBI Gene Model | MGI Sequence Detail 5321 C57BL/6J ±  kb
transcript NM_025903 RefSeq | MGI Sequence Detail 1980 C57BL/6  
polypeptide NP_080179 RefSeq | MGI Sequence Detail 441 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR011989 Armadillo-like helical
    IPR016024 Armadillo-type fold
    IPR039777 Interferon-related developmental regulator
    IPR006921 Interferon-related developmental regulator, C-terminal
    IPR007701 Interferon-related developmental regulator, N-terminal
Molecular
Reagents
less
  • All nucleic 14
    cDNA 13
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914257, MGI:2142941, MGI:2143129
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Phenotypes 8
  • Earliest
    J:49566 Buanne P, et al., Cloning of the human interferon-related developmental regulator (IFRD1) gene coding for the PC4 protein, a member of a novel family of developmentally regulated genes. Genomics. 1998 Jul 15;51(2):233-42
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/19/2020
MGI 6.15 		The Jackson Laboratory