About   Help   FAQ
Vmn2r88 Gene Detail
Summary
  • Symbol
    Vmn2r88
  • Name
    vomeronasal 2, receptor 88
  • Synonyms
    V2r13, V2r3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1316662
    NCBI Gene: 669149
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:51648458-51656984 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 26.51 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    65 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316662
protein coding gene Chr14:51648277-51658178 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027042
protein coding gene Chr2:188625515-188644809 (+)
A/J MGP_AJ_G0021234
protein coding gene Chr14:44135959-44142392 (+)
AKR/J MGP_AKRJ_G0035948
protein coding gene ChrX:124537399-124550316 (-)
BALB/cJ MGP_BALBcJ_G0021237
protein coding gene Chr14:44227715-44233358 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021676
protein coding gene Chr14:47317961-47326761 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019224
protein coding gene Chr14:43423782-43429481 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0020984
protein coding gene Chr14:48710983-48717314 (+)
DBA/2J MGP_DBA2J_G0029679
protein coding gene Chr5:106862354-106885213 (-)
FVB/NJ MGP_FVBNJ_G0021090
protein coding gene Chr14:43568371-43575077 (+)
LP/J MGP_LPJ_G0021182
protein coding gene Chr14:45955916-45964668 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0021702
protein coding gene Chr14:45198641-45216404 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    3 phenotype references
Male mice homozygous for a knock-out allele exhibit normal pup-mediated attack.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 669149 NCBI Gene Model | MGI Sequence Detail 8527 C57BL/6J ±  kb
transcript NM_001385269 RefSeq | MGI Sequence Detail 3195 C57BL/6  
polypeptide NP_001372198 RefSeq | MGI Sequence Detail 849 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR000337 GPCR, family 3
    IPR017978 GPCR family 3, C-terminal
    IPR000068 GPCR, family 3, extracellular calcium-sensing receptor-related
    IPR011500 GPCR, family 3, nine cysteines domain
    IPR038550 GPCR, family 3, nine cysteines domain superfamily
    IPR004073 GPCR, family 3, vomeronasal receptor, type 2
    IPR028082 Periplasmic binding protein-like I
    IPR001828 Receptor, ligand binding region
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 3
Other
Accession IDs
less
MGI:1316725
References
more
  • Summaries
    All 15
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:42391 Matsunami H, et al., A multigene family encoding a diverse array of putative pheromone receptors in mammals. Cell. 1997 Aug 22;90(4):775-84
  • Latest
    J:269574 Isogai Y, et al., Multisensory Logic of Infant-Directed Aggression by Males. Cell. 2018 Dec 13;175(7):1827-1841.e17

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/12/2021
MGI 6.17
The Jackson Laboratory