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Gtpbp6
Gene Detail
Symbol

Name
ID
Gtpbp6
GTP binding protein 6 (putative)
MGI:1306825
Synonyms
Pgbpll, pgpl
Feature Type
protein coding gene
Genetic Map
Chromosome 5
53.30 cM, cytoband E
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:110103975-110108197 bp, - strand
From VEGA annotation of GRCm38

  4223 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8157  Vertebrate Homology Class
1 human; 1 mouse; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GTPBP6
Protein SuperFamily: GTP-binding protein, HflX type
Gene Tree: Gtpbp6

Human
homologs
GTPBP6, GTP binding protein 6 (putative)
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8225
neXtProt AC: NX_O43824

Human Synonyms: PGPL

Human Chr (Location): XYp22.33; Yp11.32

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Gtpbp6 interacts with 6 markers (Mir125a, Mir125b-1, Mir125b-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process biological_process
Component cellular_component
Function GTP binding, metal ion binding, ...
External Resources: FuncBase
Expression
cDNA source data(39)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gtpbp6    NEW 
Molecular
reagents
All nucleic(40) cDNA(40)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000026198 (Evidence)
Ensembl Gene Model ENSMUSG00000033434 (Evidence)
Entrez Gene 107999 (Evidence)
UniGene 86267
DFCI TC1580712, TC1676378
DoTS DT.530882, DT.94286089, DT.97414710
Consensus CDS Project CCDS51604.1
International Mouse Phenotyping Consortium Status Gtpbp6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026198 VEGA Gene Model | MGI Sequence Detail 4223 C57BL/6J ±  kb
transcript OTTMUST00000064742 VEGA | MGI Sequence Detail 1617 Not Applicable 
polypeptide OTTMUSP00000032194 VEGA | MGI Sequence Detail 514 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(14) UniProt(5)
Polymorphisms
SNPs within 2kb(51 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016496 GTPase HflX
InterPro IPR006073 GTP binding domain
InterPro IPR030394 HflX-type guanine nucleotide-binding (G) domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
Protein Ontology PR:000030240 GTP-binding protein 6
References
(Earliest) J:46367 Gianfrancesco F, et al., A novel pseudoautosomal gene encoding a putative GTP-binding protein resides in the vicinity of the Xp/Yp telomere. Hum Mol Genet. 1998 Mar;7(3):407-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(29)
Other
accession IDs
MGI:2141116

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory