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Pcdh9 Gene Detail
Summary
  • Symbol
    Pcdh9
  • Name
    protocadherin 9
  • Synonyms
    1500001L12Rik, A730003J17Rik, C530050I23Rik, C630029H24Rik, LOC382930
  • Feature Type
    protein coding gene
  • IDs
    MGI:1306801
    NCBI Gene: 211712
Location & Maps
more
  • Sequence Map
    Chr14:93013410-93890679 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      877270 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 45.80 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PCDH9, protocadherin 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCDH9, protocadherin 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 5101
    neXtProt AC: NX_Q9HC56

  • Chr Location
    13q21.32; chr13:66302834-67230336 (-)  GRCh38.p2
  • HomoloGene
    Vertebrate Homology Class 10698
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: PCDH9
  • Gene Tree
    Pcdh9
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Pcdh9
  • Incidental Mutations
    Mutagenetix , APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    143
  • Tissues
    120
  • cDNA Data
    19
  • Literature Summary
    12
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050936 VEGA Gene Model | MGI Sequence Detail 877270 C57BL/6J ±  kb
transcript OTTMUST00000129100 VEGA | MGI Sequence Detail 6521 Not Applicable  
polypeptide OTTMUSP00000069389 VEGA | MGI Sequence Detail 1237 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    9487 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 22
    Primer pair 1
    Other 1

    Microarray probesets 9
Other
Accession IDs
less
MGI:1916209, MGI:2444471, MGI:2685143, MGI:2686059, MGI:3510991
References
more
  • Summaries
    All 32
    Developmental Gene Expression 12
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:50455 Strehl S, et al., Characterization of two novel protocadherins (PCDH8 and PCDH9) localized on human chromosome 13 and mouse chromosome 14. Genomics. 1998 Oct 1;53(1):81-9
  • Latest
    J:222248 Fossat N, et al., Context-specific function of the LIM homeobox 1 transcription factor in head formation of the mouse embryo. Development. 2015 Jun 1;142(11):2069-79
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/20/2016
MGI 6.05 		The Jackson Laboratory