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Matr3
Gene Detail
Symbol

Name
ID
Matr3
matrin 3
MGI:1298379
Synonyms
1110061A14Rik, 2810017I02Rik, D030046F20Rik, mKIAA0723
Feature Type
protein coding gene
Genetic Map
Chromosome 18
19.14 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr18:35562146-35593835 bp, + strand
From VEGA annotation of GRCm38

  31690 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7830  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Matr3

Human
homologs
Human Homolog MATR3, matrin 3
NCBI Gene ID 9782
neXtProt AC  NX_P43243
Human Synonyms  ALS21, MPD2, VCPDM
Human Chr (Location)  5q31.2; chr5:139273752-139331677 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human MATR3
Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(10)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Matr3 interacts with 355 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Component membrane, nucleoplasm, ...
Function metal ion binding, nucleic acid binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (2)    Tissues (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 2
cDNA source data(26)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(29) Genomic(1) cDNA(27) Primer pair(1)
Microarray probesets(11)
Other database
links
VEGA Gene ModelOTTMUSG00000045440 (Evidence)
Ensembl Gene ModelENSMUSG00000037236 (Evidence)
Entrez Gene17184 (Evidence)
PDB1X4D, 1X4F
Consensus CDS ProjectCCDS29142.1
International Mouse Knockout Project StatusMatr3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045440 VEGA Gene Model | MGI Sequence Detail 31690 C57BL/6J ±  kb
transcript OTTMUST00000119211 VEGA | MGI Sequence Detail 6262 Not Applicable 
polypeptide OTTMUSP00000066390 VEGA | MGI Sequence Detail 846 Not Applicable 

For the selected sequences
All sequences(91) RefSeq(2) UniProt(21)
Polymorphisms
RFLP(1) : SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR000690 Zinc finger, C2H2-type matrin
InterPro IPR003604 Zinc finger, U1-type
Protein Ontology PR:000010209 matrin-3
References
(Earliest) J:49740 Matsushima Y, et al., Cloning and genomic mapping of the mouse matrin 3 gene and its pseudogenes. Cytogenet Cell Genet. 1998;81(3-4):194-8
(Latest) J:100324 Bulfone A, et al., Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. J Neurosci. 2005 Aug 17;25(33):7586-600
All references(32)
Other
accession IDs
MGI:1916077, MGI:1917217, MGI:2147265, MGI:2147377, MGI:3026954

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory