About   Help   FAQ
Matr3
Gene Detail
 Symbol
Name
ID
Matr3
matrin 3
MGI:1298379
Synonyms 1110061A14Rik, 2810017I02Rik, D030046F20Rik, mKIAA0723
Feature Type protein coding gene
Genetic Map
Chromosome 18
19.14 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr18:35562158-35592045 bp, + strand
From NCBI annotation of GRCm38

  29888 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7830  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Gene Tree: Matr3

Human
homologs
Human Homolog MATR3, matrin 3
NCBI Gene ID 9782
neXtProt AC  NX_P43243
Human Synonyms  MPD2, VCPDM
Human Chr (Location)  5q31.2; chr5:139273752-139331677 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human MATR3
Alleles
and
phenotypes
All alleles(143) : Gene trapped(143)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Component nucleus
Function metal ion binding, nucleic acid binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (2)    Tissues (2)   
Theiler Stages: 15, 17
Assay TypeResults
RT-PCR 2
cDNA source data(26)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(29) Genomic(1) cDNA(27) Primer pair(1)
Microarray probesets(11)
Other database
links
Ensembl Gene ModelENSMUSG00000037236 (Evidence)
Entrez Gene17184 (Evidence)
PDB1X4D, 1X4F
Consensus CDS ProjectCCDS29142.1
International Mouse Knockout Project StatusMatr3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 17184 NCBI Gene Model | MGI Sequence Detail 29888 C57BL/6J ±  kb
transcript NM_010771 RefSeq | MGI Sequence Detail 4472 Not Specified 
polypeptide Q8K310 UniProt | EBI | MGI Sequence Detail 846 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(2) UniProt(7)
Polymorphisms RFLP(1) : SNPs within 2kb(67 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR000690 Zinc finger, C2H2-type matrin
InterPro IPR003604 Zinc finger, U1-type
Protein Ontology PR:000010209 matrin-3
Graphical View of Protein Domain Structure
References (Earliest) J:49740 Matsushima Y, et al., Cloning and genomic mapping of the mouse matrin 3 gene and its pseudogenes. Cytogenet Cell Genet. 1998;81(3-4):194-8
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(34)
Other
accession IDs
MGI:1916077, MGI:1917217, MGI:2147265, MGI:2147377, MGI:3026954

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory