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Rpl9 Gene Detail
Summary
  • Symbol
    Rpl9
  • Name
    ribosomal protein L9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1298373
    NCBI Gene: 20005
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:65545707-65548774 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 33.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    237 from dbSNP Build 142
  • Strain Annotations
    29
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1298373
 protein coding gene Chr5:65545707-65548787 (-)
129S1/SvImJ ENSMUSG00200011500
 protein coding gene Chr13:66951212-66951909 (-)
129S1/SvImJ ENSMUSG00200035183
 protein coding gene Chr5:61160830-61166366 (-)
A/J ENSMUSG00195000243
 protein coding gene Chr5:60531145-60536680 (-)
A/J ENSMUSG00195027396
 protein coding gene Chr13:67580405-67581114 (-)
AKR/J ENSMUSG00220007050
 protein coding gene Chr5:60672808-60678344 (-)
AKR/J ENSMUSG00220031708
 protein coding gene Chr13:66173947-66174654 (-)
AKR/J ENSMUSG00220019161
 protein coding gene Chr9:83633370-83634197 (-)
BALB/cJ ENSMUSG00180017421
 protein coding gene Chr8:107903299-107903998 (-)
BALB/cJ ENSMUSG00180005869
 protein coding gene Chr5:60316976-60322511 (-)
BALB/cJ ENSMUSG00180022547
 protein coding gene Chr13:68078798-68079505 (-)
C3H/HeJ ENSMUSG00175025178
 protein coding gene Chr5:62351586-62357125 (-)
C57BL/6NJ ENSMUSG00215007642
 protein coding gene Chr13:68145212-68145922 (-)
C57BL/6NJ ENSMUSG00215005239
 protein coding gene Chr5:61089697-61095233 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027247
 protein coding gene Chr5:58682081-58685223 (-)
CAST/EiJ ENSTCUG00005000240
 protein coding gene Chr5:60242491-60245480 (-)
CBA/J ENSMUSG00210022986
 protein coding gene Chr5:61264538-61270077 (-)
DBA/2J ENSMUSG00185016765
 protein coding gene Chr13:71371921-71372628 (-)
DBA/2J ENSMUSG00185005290
 protein coding gene Chr5:63122050-63127589 (-)
FVB/NJ ENSMUSG00205010300
 protein coding gene Chr5:60073530-60079066 (-)
FVB/NJ ENSMUSG00205016210
 protein coding gene Chr13:67065983-67066692 (-)
JF1/MsJ ENSUMUG00000017856
 protein coding gene Chr5:67592889-67598455 (-)
LP/J ENSMUSG00230024344
 protein coding gene Chr13:81289785-81290481 (-)
LP/J ENSMUSG00230006278
 protein coding gene Chr5:67773585-67779121 (-)
NOD/ShiLtJ ENSMUSG00190000269
 protein coding gene Chr5:60256227-60261762 (-)
NOD/ShiLtJ ENSMUSG00190035037
 protein coding gene Chr13:67677356-67678061 (-)
NOD/ShiLtJ ENSMUSG00190011015
 protein coding gene Chr9:83803139-83803966 (-)
NZO/HlLtJ ENSMUSG00225009932
 protein coding gene Chr5:72899640-72905176 (-)
NZO/HlLtJ ENSMUSG00225027722
 protein coding gene Chr13:73780467-73781165 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RPL9, ribosomal protein L9
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL9, ribosomal protein L9
  • Synonyms
    L9, NPC-A-16, uL6
  • Links
    NCBI Gene ID: 6133
    UniProt: P32969

  • Chr Location
    4p14; chr4:39451747-39458948 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    35
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    15
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20005 NCBI Gene Model | MGI Sequence Detail 3068 C57BL/6J ±  kb
transcript NM_011292 RefSeq | MGI Sequence Detail 737 C57BL/6  
polypeptide P51410 UniProt | EBI | MGI Sequence Detail 192 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 10
References
more
  • Summaries
    All 50
    Developmental Gene Expression 2
    Gene Ontology 11
    Phenotypes 20
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:333015 Li H, et al., A male germ-cell-specific ribosome controls male fertility. Nature. 2022 Dec;612(7941):725-731
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory