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Rpl9 Gene Detail
Summary
  • Symbol
    Rpl9
  • Name
    ribosomal protein L9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1298373
    NCBI Gene: 20005
  • Gene Overview
    MyGene.info: RPL9
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:65388364-65391431 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 33.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1298373
protein coding gene Chr5:65388364-65391444 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029576
protein coding gene Chr5:65022945-65026029 (-)
A/J MGP_AJ_G0029544
protein coding gene Chr5:62607982-62611061 (-)
AKR/J MGP_AKRJ_G0029492
protein coding gene Chr5:64600356-64603430 (-)
BALB/cJ MGP_BALBcJ_G0029553
protein coding gene Chr5:63298546-63301626 (-)
C3H/HeJ MGP_C3HHeJ_G0029276
protein coding gene Chr5:64937956-64941034 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030007
protein coding gene Chr5:67703802-67706879 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027247
protein coding gene Chr5:58682081-58685223 (-)
CAST/EiJ MGP_CASTEiJ_G0028684
protein coding gene Chr5:64042040-64046074 (-)
CBA/J MGP_CBAJ_G0029245
protein coding gene Chr5:69900895-69904178 (-)
DBA/2J MGP_DBA2J_G0029391
protein coding gene Chr5:62646464-62649744 (-)
FVB/NJ MGP_FVBNJ_G0029351
protein coding gene Chr5:61818100-61821178 (-)
LP/J MGP_LPJ_G0029476
protein coding gene Chr5:65513891-65533800 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029379
protein coding gene Chr5:72778180-72789557 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030040
protein coding gene Chr5:64269971-64273232 (-)
PWK/PhJ MGP_PWKPhJ_G0028408
protein coding gene Chr5:61608174-61611551 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028242
protein coding gene Chr5:63586668-63589754 (-)
WSB/EiJ MGP_WSBEiJ_G0028764
protein coding gene Chr5:64472896-64476168 (-)



Homology
more
  • Human Ortholog
    RPL9, ribosomal protein L9
  • Vertebrate Orthologs
    11
  • Human Ortholog
    RPL9, ribosomal protein L9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    L9, NPC-A-16
  • Links
    NCBI Gene ID: 6133
    neXtProt AC: NX_P32969
    UniProt: P32969

  • Chr Location
    4p14; chr4:39454124-39458948 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20005 NCBI Gene Model | MGI Sequence Detail 3068 C57BL/6J ±  kb
transcript NM_011292 RefSeq | MGI Sequence Detail 737 C57BL/6  
polypeptide P51410 UniProt | EBI | MGI Sequence Detail 192 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    7 Sequences
  • InterPro Domains
    IPR000702 Ribosomal protein L6
    IPR020040 Ribosomal protein L6, alpha-beta domain
    IPR036789 Ribosomal protein L6, alpha-beta domain superfamily
    IPR002359 Ribosomal protein L6, conserved site-2
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 10
References
more
  • Summaries
    All 44
    Developmental Gene Expression 2
    Gene Ontology 7
    Phenotypes 20
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory