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Ubxn1 Gene Detail
Summary
  • Symbol
    Ubxn1
  • Name
    UBX domain protein 1
  • Synonyms
    4930455J02Rik, D19Ertd721e, MGC:6696, T25529
  • Feature Type
    protein coding gene
  • IDs
    MGI:1289301
    NCBI Gene: 225896
Location & Maps
more
  • Sequence Map
    Chr19:8871559-8875663 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      4105 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 5.88 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    UBXN1, UBX domain protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBXN1, UBX domain protein 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    2B28, SAKS1, UBXD10
  • Links
    NCBI Gene ID: 51035
    neXtProt AC: NX_Q04323

  • Chr Location
    11q12.3; chr11:62676498-62679117 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 9283
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 western clawed frog;2 zebrafish
  • HCOP
    human homology predictions: UBXN1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071655 Ensembl Gene Model | MGI Sequence Detail 4105 C57BL/6J ±  kb
transcript ENSMUST00000096255 Ensembl | MGI Sequence Detail 1041 Not Applicable  
polypeptide ENSMUSP00000093974 Ensembl | MGI Sequence Detail 297 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    16 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 121
    cDNA 120
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1918899, MGI:2147813
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory