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Ubxn1 Gene Detail
Summary
  • Symbol
    Ubxn1
  • Name
    UBX domain protein 1
  • Synonyms
    4930455J02Rik, D19Ertd721e, MGC:6696, T25529
  • Feature Type
    protein coding gene
  • IDs
    MGI:1289301
    NCBI Gene: 225896
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:8848912-8853030 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 5.88 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1289301
protein coding gene Chr19:8848860-8853227 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024816
protein coding gene Chr19:6154534-6158632 (+)
A/J MGP_AJ_G0024784
protein coding gene Chr19:5823332-5827407 (+)
AKR/J MGP_AKRJ_G0024759
protein coding gene Chr19:5918893-5923531 (+)
BALB/cJ MGP_BALBcJ_G0024784
protein coding gene Chr19:5930292-5934606 (+)
C3H/HeJ MGP_C3HHeJ_G0024550
protein coding gene Chr19:6003796-6009371 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025231
protein coding gene Chr19:6291029-6295087 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022660
protein coding gene Chr19:6077032-6080978 (+)
CAST/EiJ MGP_CASTEiJ_G0024023
protein coding gene Chr19:5654453-5660307 (+)
CBA/J MGP_CBAJ_G0024524
protein coding gene Chr19:6399388-6403318 (+)
DBA/2J MGP_DBA2J_G0024651
protein coding gene Chr19:5656127-5660191 (+)
FVB/NJ MGP_FVBNJ_G0024618
protein coding gene Chr19:5728748-5732701 (+)
LP/J MGP_LPJ_G0024738
protein coding gene Chr19:6048716-6052814 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024645
protein coding gene Chr19:6264122-6269308 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025280
protein coding gene Chr19:5962644-5967331 (+)
PWK/PhJ MGP_PWKPhJ_G0023768
protein coding gene Chr19:5330300-5334530 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023573
protein coding gene Chr19:5573338-5577426 (+)
WSB/EiJ MGP_WSBEiJ_G0024085
protein coding gene Chr19:5935764-5939774 (+)



Homology
more
  • Human Ortholog
    UBXN1, UBX domain protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    UBXN1, UBX domain protein 1
  • Synonyms
    2B28, SAKS1, UBXD10
  • Links
    NCBI Gene ID: 51035
    neXtProt AC: NX_Q04323
    UniProt: Q04323

  • Chr Location
    11q12.3; chr11:62676498-62679117 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 225896 NCBI Gene Model | MGI Sequence Detail 4119 C57BL/6J ±  kb
    transcript NM_001362044 RefSeq | MGI Sequence Detail 1154 C57BL/6  
    polypeptide Q922Y1 UniProt | EBI | MGI Sequence Detail 297 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 122
      cDNA 121
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1918899, MGI:2147813
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 6
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    08/03/2022
    MGI 6.21
    The Jackson Laboratory