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Slc52a2 Gene Detail
Summary
  • Symbol
    Slc52a2
  • Name
    solute carrier protein 52, member 2
  • Synonyms
    2010003P03Rik, D15Ertd747e, GPCR42, Gpr172b, PAR2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1289288
    NCBI Gene: 52710
  • Gene Overview
    MyGene.info: SLC52A2
Location & Maps
more
  • Sequence Map
    Chr15:76538943-76542130 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3188 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 36.04 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SLC52A2, solute carrier family 52 member 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC52A2, solute carrier family 52 member 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BVVLS2, D15Ertd747e, GPCR41, GPR172A, hRFT3, PAR1, RFT3, RFVT2
  • Links
    NCBI Gene ID: 79581
    neXtProt AC: NX_Q9HAB3

  • Chr Location
    8q24.3; chr8:144358557-144361286 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human SLC52A2 associations

Human Disease Mouse Models
       Brown-Vialetto-Van Laere Syndrome 2; BVVLS2   OMIM: 614707
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    31 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    3
  • Gene trapped
    4
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    5 involving Slc52a2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022560 Ensembl Gene Model | MGI Sequence Detail 3188 C57BL/6J ±  kb
transcript ENSMUST00000023220 Ensembl | MGI Sequence Detail 2700 Not Applicable  
polypeptide ENSMUSP00000023220 Ensembl | MGI Sequence Detail 450 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    15 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000008188 solute carrier family 52, riboflavin transporter, member 1
  • InterPro Domains
    IPR009357 Solute carrier family 52, riboflavin transporter
Molecular
Reagents
less
  • All nucleic 67
    cDNA 66
    Primer pair 1

    Microarray probesets 7
Other
Accession IDs
less
MGI:1923771
References
more
  • Summaries
    All 35
    Diseases 1
    Gene Ontology 3
    Phenotypes 31
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory