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Slc52a2
Gene Detail
Symbol

Name
ID
Slc52a2
solute carrier protein 52, member 2
MGI:1289288
Synonyms
2010003P03Rik, D15Ertd747e, GPCR42, Gpr172b, PAR2
Feature Type
protein coding gene
Genetic Map
Chromosome 15
36.04 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:76538943-76542130 bp, + strand
From Ensembl annotation of GRCm38

  3188 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56994  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC52A2
Gene Tree: Slc52a2

Human
homologs
SLC52A2, solute carrier family 52 (riboflavin transporter), member 2
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 79581
neXtProt AC: NX_Q9HAB3

Human Synonyms: BVVLS2, D15Ertd747e, GPCR41, GPR172A, hRFT3, PAR1, RFT3, RFVT2

Human Chr (Location): 8q24.3; chr8:144358557-144361286 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SLC52A2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Radiation induced(1) Targeted(3)
Genomic Mutations involving Slc52a2 (1)
Incidental mutations (data from Mutagenetix , CvDC )
Phenotype Images(2)
Interactions
Slc52a2 interacts with 111 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process riboflavin transport, transport
Component integral component of membrane, integral component of plasma membrane, ...
Function riboflavin transporter activity
External Resources: FuncBase
Expression
cDNA source data(65)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc52a1 ; ZFIN slc52a2    NEW 
Molecular
reagents
All nucleic(66) cDNA(65) Primer pair(1)
Microarray probesets(7)
Other database
links
Ensembl Gene Model ENSMUSG00000022560 (Evidence)
Entrez Gene 52710 (Evidence)
UniGene 28597
DFCI TC1750452, TC1574747
DoTS DT.489201, DT.103574498, DT.110815538, DT.101738140
NIA Mouse Gene Index U016374
Consensus CDS Project CCDS27575.1
International Mouse Phenotyping Consortium Status Slc52a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022560 Ensembl Gene Model | MGI Sequence Detail 3188 C57BL/6J ±  kb
transcript ENSMUST00000023220 Ensembl | MGI Sequence Detail 2700 Not Applicable 
polypeptide ENSMUSP00000023220 Ensembl | MGI Sequence Detail 450 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009357 Endogenous retrovirus receptor
Protein Ontology PR:000008188 solute carrier family 52, riboflavin transporter, member 1
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:1923771

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory