About   Help   FAQ
Slc52a2
Gene Detail
 Symbol
Name
ID
Slc52a2
solute carrier protein 52, member 2
MGI:1289288
Synonyms 2010003P03Rik, D15Ertd747e, GPCR42, Gpr172b, PAR2
Feature Type protein coding gene
Genetic Map
Chromosome 15
36.04 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:76538943-76542130 bp, + strand
From NCBI annotation of GRCm38

  3188 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56994  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Slc52a2

Human
homologs
Human Homolog SLC52A2, solute carrier family 52 (riboflavin transporter), member 2
NCBI Gene ID 79581
neXtProt AC  NX_Q9HAB3
Human Synonyms  BVVLS2, D15Ertd747e, GPCR41, GPR172A, hRFT3, PAR1, RFT3, RFVT2
Human Chr (Location)  8q24.3; chr8:144358557-144361286 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human SLC52A2
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Radiation induced(1) Targeted(3)
Genomic Mutations involving Slc52a2 (1)
Incidental mutations (data from Mutagenetix )
Interactions
Slc52a2 interacts with 111 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process riboflavin transport, transport
Component integral component of membrane, integral component of plasma membrane, ...
Function riboflavin transporter activity
External Resources: FuncBase
Expression
cDNA source data(65)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(66) cDNA(65) Primer pair(1)
Microarray probesets(7)
Other database
links
Ensembl Gene ModelENSMUSG00000022560 (Evidence)
Entrez Gene52710 (Evidence)
UniGene28597
DFCITC1574747, TC1750452
DoTSDT.101738140, DT.103574498, DT.110815538, DT.489201
NIA Mouse Gene IndexU016374
Consensus CDS ProjectCCDS27575.1
International Mouse Knockout Project StatusSlc52a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 52710 NCBI Gene Model | MGI Sequence Detail 3188 C57BL/6J ±  kb
transcript NM_029643 RefSeq | MGI Sequence Detail 2700 C57BL/6 
polypeptide Q9D8F3 UniProt | EBI | MGI Sequence Detail 450 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009357 Endogenous retrovirus receptor
Protein Ontology PR:000008188 solute carrier family 52, riboflavin transporter, member 1
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:1923771

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/12/2014
MGI 5.19
The Jackson Laboratory