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Pcm1
Gene Detail
Symbol

Name
ID
Pcm1
pericentriolar material 1
MGI:1277958
Synonyms
2600002H09Rik, 9430077F19Rik, C030044G17Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
23.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr8:41239759-41334086 bp, + strand
From Ensembl annotation of GRCm38

  94328 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4518  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PCM1
Gene Tree: Pcm1

Human
homologs
PCM1, pericentriolar material 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 5108
neXtProt AC: NX_Q15154

Human Synonyms: PTC4, RET/PCM-1

Human Chr (Location): 8p22-p21.3; chr8:17922857-18029948 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human PCM1

Mutations,
alleles, and
phenotypes
All mutations/alleles(42) : Gene trapped(41) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pcm1 interacts with 374 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (38 annotations)
Process cell projection organization, centrosome organization, ...
Component cell, cell projection, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pcm1 ; ZFIN pcm1    NEW 
Molecular
reagents
All nucleic(19) Genomic(1) cDNA(17) Primer pair(1)
Microarray probesets(6)
Other database
links
Ensembl Gene Model ENSMUSG00000031592 (Evidence)
Entrez Gene 18536 (Evidence)
DFCI TC1575336, TC1639508, TC1599157
DoTS DT.55282118, DT.101390230, DT.489409, DT.103569446
NIA Mouse Gene Index U009290
Consensus CDS Project CCDS22261.1
International Mouse Phenotyping Consortium Status Pcm1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031592 Ensembl Gene Model | MGI Sequence Detail 94328 C57BL/6J ±  kb
transcript ENSMUST00000045218 Ensembl | MGI Sequence Detail 8380 Not Applicable 
polypeptide ENSMUSP00000039709 Ensembl | MGI Sequence Detail 2025 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(18) UniProt(2)
Polymorphisms
PCR(1) : SNPs within 2kb(489 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024138 Pericentriolar material 1 protein
Protein Ontology PR:000012419 pericentriolar material 1 protein
References
(Earliest) J:28401 Bettenhausen B, et al., Efficient isolation of novel mouse genes differentially expressed in early postimplantation embryos. Genomics. 1995 Aug 10;28(3):436-41
(Latest) J:215958 Klinger M, et al., The novel centriolar satellite protein SSX2IP targets Cep290 to the ciliary transition zone. Mol Biol Cell. 2014 Feb;25(4):495-507
All references(50)
Other
accession IDs
MGI:1919589, MGI:1924673, MGI:1924736

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory