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Bsn Gene Detail
Summary
  • Symbol
    Bsn
  • Name
    bassoon
  • Synonyms
    presynaptic cytomatrix protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277955
    NCBI Gene: 12217
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108096022-108190384 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.07 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    413 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277955
protein coding gene Chr9:108096022-108190419 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035287
protein coding gene Chr9:110025088-110127452 (-)
A/J MGP_AJ_G0035266
protein coding gene Chr9:106001502-106096816 (-)
AKR/J MGP_AKRJ_G0035198
protein coding gene Chr9:108646322-108745502 (-)
BALB/cJ MGP_BALBcJ_G0035260
protein coding gene Chr9:105698300-105793420 (-)
C3H/HeJ MGP_C3HHeJ_G0034970
protein coding gene Chr9:109044794-109141939 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035780
protein coding gene Chr9:113005027-113106988 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032678
protein coding gene Chr9:103436231-103529145 (-)
CAST/EiJ MGP_CASTEiJ_G0034281
protein coding gene Chr9:109001833-109105520 (-)
CBA/J MGP_CBAJ_G0034938
protein coding gene Chr9:116998408-117106355 (-)
DBA/2J MGP_DBA2J_G0035099
protein coding gene Chr9:105457021-105552778 (-)
FVB/NJ MGP_FVBNJ_G0035047
protein coding gene Chr9:104226015-104321519 (-)
LP/J MGP_LPJ_G0035175
protein coding gene Chr9:110213528-110323429 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035086
protein coding gene Chr9:118589971-118693049 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035801
protein coding gene Chr9:108928710-109035189 (-)
PWK/PhJ MGP_PWKPhJ_G0033988
protein coding gene Chr9:105778328-105875195 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033823
protein coding gene Chr9:108986135-109079495 (-)
WSB/EiJ MGP_WSBEiJ_G0034402
protein coding gene Chr9:108804573-108912155 (-)



Homology
more
  • Human Ortholog
    BSN, bassoon presynaptic cytomatrix protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    BSN, bassoon presynaptic cytomatrix protein
    Orthology source: HGNC, HomoloGene
  • Synonyms
    ZNF231
  • Links
    NCBI Gene ID: 8927
    neXtProt AC: NX_Q9UPA5
    UniProt: Q9UPA5

  • Chr Location
    3p21.31; chr3:49554489-49671549 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 31161
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: BSN
  • Gene Tree
    Bsn
Human Diseases
more
  • Diseases
    1 with Bsn mouse models

Human Disease Mouse Models
      
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotypes from 2 alleles in 1 genetic background
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mutants lacking functional protein exhibit impaired hippocampal and photoreceptor synaptic transmission, aberrant photoreceptor ribbon synapse formation, and spontaneous epileptic seizures.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032589 Ensembl Gene Model | MGI Sequence Detail 94363 C57BL/6J ±  kb
    transcript ENSMUST00000035208 Ensembl | MGI Sequence Detail 15938 Not Applicable  
    polypeptide ENSMUSP00000035208 Ensembl | MGI Sequence Detail 3942 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 11
      Genomic 2
      cDNA 9

      Microarray probesets 6
    References
    more
    • Summaries
      All 90
      Developmental Gene Expression 19
      Diseases 1
      Gene Ontology 21
      Phenotypes 28
    • Earliest
      J:48938 Dieck S, et al., Bassoon, a novel zinc-finger CAG/glutamine-repeat protein selectively localized at the active zone of presynaptic nerve terminals. J Cell Biol. 1998 Jul 27;142(2):499-509
    • Latest
      J:256127 Okerlund ND, et al., Bassoon Controls Presynaptic Autophagy through Atg5. Neuron. 2017 Feb 22;93(4):897-913.e7

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory