Zfp644 MGI Mouse Gene Detail - MGI:1277212

Symbol

Zfp644
Name

zinc finger protein 644
Synonyms

1110068L01Rik, BM-005, D5Ertd689e, mKIAA1221, Zep-2

Feature Type

protein coding gene
IDs

MGI:1277212
NCBI Gene: 52397
Gene Overview

MyGene.info: ZNF644
Alliance

gene page
Transcription Start Sites

6 TSS

Sequence Map

Chr5:106616739-106696834 bp, - strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 5, 51.43 cM
Mapping Data

3 experiments

SNPs within 2kb

298 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1277212	protein coding gene	Chr5:106616739-106697287 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029831	protein coding gene	Chr5:108584401-108665859 (-)
A/J	MGP_AJ_G0029795	protein coding gene	Chr5:104431850-104512660 (-)
AKR/J	MGP_AKRJ_G0029740	protein coding gene	Chr5:107818497-107901501 (-)
BALB/cJ	MGP_BALBcJ_G0029807	protein coding gene	Chr5:105576065-105658594 (-)
C3H/HeJ	MGP_C3HHeJ_G0029529	protein coding gene	Chr5:108267343-108347882 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0030261	protein coding gene	Chr5:113086805-113171447 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027495	protein coding gene	Chr5:99517407-99597783 (-)
CAST/EiJ	MGP_CASTEiJ_G0028943	protein coding gene	Chr5:107164766-107253774 (-)
CBA/J	MGP_CBAJ_G0029497	protein coding gene	Chr5:116855891-116943145 (-)
DBA/2J	MGP_DBA2J_G0029643	protein coding gene	Chr5:104582518-104663196 (-)
FVB/NJ	MGP_FVBNJ_G0029600	protein coding gene	Chr5:103305126-103385761 (-)
LP/J	MGP_LPJ_G0029731	protein coding gene	Chr5:109163436-109244582 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029632	protein coding gene	Chr5:121827903-121912984 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030295	protein coding gene	Chr5:107349378-107432609 (-)
PWK/PhJ	MGP_PWKPhJ_G0028656	protein coding gene	Chr5:103370675-103452495 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028494	protein coding gene	Chr5:104872401-104949965 (-)
WSB/EiJ	MGP_WSBEiJ_G0029016	protein coding gene	Chr5:107675751-107757049 (-)

Human Ortholog

ZNF644, zinc finger protein 644

Vertebrate Orthologs

9

Human Ortholog

ZNF644, zinc finger protein 644
Orthology source: HomoloGene, HGNC
Synonyms

BM-005, MYP21, NatF, ZEP-2
Links

HGNC:29222

NCBI Gene ID: 84146

neXtProt AC: NX_Q9H582

UniProt: Q9H582
Chr Location

1p22.2; chr1:90915298-91022269 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 12971
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: ZNF644
Gene Tree

Zfp644

Diseases

1 with human ZNF644 associations

				Human Disease	Mouse Models
				myopia IDs myopia DOID:11830 EFO:0003927 ICD10CM:H52.1 ICD9CM:367.1 MESH:D009216 {http://www.w3.org/2004/02/skos/core#exactMatch="exactMatch"} NCI:C102533 OMIM:160700 OMIM:255500 OMIM:300613 OMIM:310460 OMIM:603221 OMIM:608367 OMIM:608474 OMIM:608908 OMIM:609256 OMIM:609257 OMIM:609258 OMIM:609259 OMIM:609994 OMIM:609995 OMIM:610320 OMIM:612554 OMIM:612717 OMIM:613959 OMIM:613969 OMIM:614166 OMIM:614167 OMIM:615420 OMIM:615431 OMIM:615946 UMLS_CUI:C0027092

Click on a disease name to see all genes associated with that disease.

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
11 phenotype references

All Mutations and Alleles

7
Chemically induced (ENU)

1
Chemically induced (other)

1
Endonuclease-mediated

1
Radiation induced

1
Spontaneous

1
Targeted

2
Genomic Mutations

3 involving Zfp644
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

22 strains or lines available

Mice homozygous for an ENU-induced allele exhibit normal blood lymphocyte populations.

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All GO Annotations

3
GO References

1

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

639
Tissues

8
cDNA Data

13
Literature Summary

1

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA ZNF644

Xenbase znf644

ZFIN znf644a, znf644b

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Zfp644 interacts with 384 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

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All Sequences

185
RefSeq

103
UniProt

14
CCDS

CCDS39196.1

Ensembl

ENSMUSG00000049606 (Evidence)
NCBI Gene

52397

			Length	Strain/Species	Flank
genomic	52397	NCBI Gene Model \| MGI Sequence Detail	80096	C57BL/6J	± kb
transcript	NM_001363318	RefSeq \| MGI Sequence Detail	6064	C57BL/6
polypeptide	NP_081132	RefSeq \| MGI Sequence Detail	1292	C57BL/6

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UniProt

14 Sequences
InterPro Domains

IPR036236 Zinc finger C2H2 superfamily

IPR013087 Zinc finger C2H2-type

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All nucleic 15

cDNA 13

Primer pair 2

Microarray probesets 6

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MGI:1916116, MGI:2140743

Summaries

All 36

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 11
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

TSS for Zfp644:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52353	Chr5:106696819-106696839 (-)	5 bp
Tssr52352	Chr5:106696788-106696816 (-)	32 bp
Tssr52351	Chr5:106696759-106696784 (-)	62 bp
Tssr52347	Chr5:106624410-106624417 (-)	72,420 bp
Tssr52346	Chr5:106624394-106624404 (-)	72,435 bp
Tssr52345	Chr5:106624354-106624361 (-)	72,476 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 05/26/2020 MGI 6.15