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Col13a1
Gene Detail
 Symbol
Name
ID
Col13a1
collagen, type XIII, alpha 1
MGI:1277201
Feature Type protein coding gene
Genetic Map
Chromosome 10
32.29 cM, cytoband B4
Detailed Genetic Map ± 1 cM


Mapping data(9)
Sequence Map
Chr10:61838236-61979108 bp, - strand
From VEGA annotation of GRCm38

  140873 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22421  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Col13a1

Human
homologs
Human Homolog COL13A1, collagen, type XIII, alpha 1
NCBI Gene ID 1305
neXtProt AC  NX_Q5TAT6
Human Synonyms  COLXIIIA1
Human Chr (Location)  10q22; chr10:69801883-69959148 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(38) : Gene trapped(33) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for an allele lacking the transmembrane exhibit small muscle fibers and are susceptible to excerise-induced muscle damage and muscle inflammation. Mice homozygous for a knock-out allele exhibit tremors and abnormal neuromuscular junction morphology and endplate potential.
 
Interactions
Col13a1 interacts with 148 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process cell adhesion, cell differentiation, ...
Component cell-cell junction, collagen trimer, ...
Function heparin binding
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (260)    Tissues (46)    Images (52)
Theiler Stages: 17, 20, 23
Assay TypeResults
RNA in situ 260
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) Genomic(3) cDNA(12) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000021424 (Evidence)
Ensembl Gene ModelENSMUSG00000058806 (Evidence)
Entrez Gene12817 (Evidence)
UniGene300931
DFCITC1585581, TC1589442, TC1608811
DoTSDT.101235865, DT.101361110, DT.521647, DT.94286513
NIA Mouse Gene IndexU031842
Consensus CDS ProjectCCDS35918.1
International Mouse Knockout Project StatusCol13a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021424 VEGA Gene Model | MGI Sequence Detail 140873 C57BL/6J ±  kb
transcript OTTMUST00000050788 VEGA | MGI Sequence Detail 3162 Not Applicable 
polypeptide OTTMUSP00000023796 VEGA | MGI Sequence Detail 739 Not Applicable 

For the selected sequences
All sequences(96) RefSeq(24) UniProt(6)
Polymorphisms PCR(2) : SNPs within 2kb(956 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
Protein Ontology PR:000005697 collagen alpha-1(XIII) chain
References (Earliest) J:38789 Peltonen S, et al., Alternative splicing of mouse alpha1(XIII) collagen RNAs results in at least 17 different transcripts, predicting alpha1(XIII) collagen chains with length varying between 651 and 710 amino acid residues. DNA Cell Biol. 1997 Feb;16(2):227-34
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(46)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory