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Tmem42 Gene Detail
Summary
  • Symbol
    Tmem42
  • Name
    transmembrane protein 42
  • Synonyms
    0610027O18Rik, 4933429E06Rik, D9Ertd662e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277176
    NCBI Gene: 66079
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:123021326-123023705 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 73.52 cM, cytoband F4
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    11 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277176
protein coding gene Chr9:123021037-123023705 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035469
protein coding gene Chr9:126038254-126040387 (+)
A/J MGP_AJ_G0035450
protein coding gene Chr9:121214698-121216793 (+)
AKR/J MGP_AKRJ_G0035383
protein coding gene Chr9:124474086-124476181 (+)
BALB/cJ MGP_BALBcJ_G0035446
protein coding gene Chr9:121140960-121142960 (+)
C3H/HeJ MGP_C3HHeJ_G0035153
protein coding gene Chr9:124914637-124916743 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035969
protein coding gene Chr9:129527332-129531301 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032851
protein coding gene Chr9:118351781-118353898 (+)
CAST/EiJ MGP_CASTEiJ_G0034458
protein coding gene Chr9:124946203-124948294 (+)
CBA/J MGP_CBAJ_G0035121
protein coding gene Chr9:134234862-134238363 (+)
DBA/2J MGP_DBA2J_G0035280
protein coding gene Chr9:120668301-120670791 (+)
FVB/NJ MGP_FVBNJ_G0035227
protein coding gene Chr9:119576240-119578357 (+)
LP/J MGP_LPJ_G0035359
protein coding gene Chr9:126373449-126375557 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035268
protein coding gene Chr9:135087744-135091313 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035988
protein coding gene Chr9:124933518-124941024 (+)
PWK/PhJ MGP_PWKPhJ_G0034162
protein coding gene Chr9:121124046-121126614 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033999
protein coding gene Chr9:125032958-125035791 (+)
WSB/EiJ MGP_WSBEiJ_G0034578
protein coding gene Chr9:124776401-124778548 (+)



Homology
more
  • Human Ortholog
    TMEM42, transmembrane protein 42
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TMEM42, transmembrane protein 42
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 131616
    neXtProt AC: NX_Q69YG0
    UniProt: Q69YG0

  • Chr Location
    3p21.31; chr3:44861909-44865667 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066233 Ensembl Gene Model | MGI Sequence Detail 2380 C57BL/6J ±  kb
transcript ENSMUST00000084733 Ensembl | MGI Sequence Detail 1041 Not Applicable  
polypeptide ENSMUSP00000081784 Ensembl | MGI Sequence Detail 157 Not Applicable  
For the selected sequence
Protein
Information
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Molecular
Reagents
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  • All nucleic 9
    cDNA 8
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
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MGI:1913329, MGI:1918523, MGI:2143245
References
more
  • Summaries
    All 27
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory