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Ddx56 Gene Detail
Summary
  • Symbol
    Ddx56
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
  • Synonyms
    2600001H07Rik, D11Ertd619e, NOH61
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277172
    NCBI Gene: 52513
  • Gene Overview
    MyGene.info: DDX56
Location & Maps
more
  • Genetic Map
    Chromosome 11, 3.94 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    DDX56, DEAD-box helicase 56
  • Vertebrate Orthologs
    9
  • Human Ortholog
    DDX56, DEAD-box helicase 56
    Orthology source: HomoloGene
  • Synonyms
    DDX21, DDX26, NOH61
  • Links
    NCBI Gene ID: 54606
    neXtProt AC: NX_Q9NY93

  • Chr Location
    7p13; chr7:44565417-44574538 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 6498
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: DDX56
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    13
  • Gene trapped
    10
  • Targeted
    3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000779 VEGA Gene Model | MGI Sequence Detail 8854 C57BL/6J ±  kb
transcript OTTMUST00000001521 VEGA | MGI Sequence Detail 1956 Not Applicable  
polypeptide OTTMUSP00000000726 VEGA | MGI Sequence Detail 546 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    31 from dbSNP Build 142
Protein
Information
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  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000029393 ATP-dependent RNA helicase DDX56
  • EC
  • InterPro Domains
    IPR011545 DEAD/DEAH box helicase domain
    IPR001650 Helicase, C-terminal
    IPR014001 Helicase superfamily 1/2, ATP-binding domain
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR014014 RNA helicase, DEAD-box type, Q motif
Molecular
Reagents
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  • All nucleic 121
    cDNA 120
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
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MGI:1915307
References
more
  • Summaries
    All 35
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:70953 Johnson RS, et al., Targeting of nonexpressed genes in embryonic stem cells via homologous recombination. Science. 1989 Sep 15;245(4923):1234-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory