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Ddx56 Gene Detail
Summary
  • Symbol
    Ddx56
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
  • Synonyms
    2600001H07Rik, D11Ertd619e, NOH61
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277172
    NCBI Gene: 52513
  • Gene Overview
    MyGene.info: DDX56
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:6258919-6267772 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 3.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277172
protein coding gene Chr11:6257545-6268391 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018018
protein coding gene Chr11:3352735-3361585 (-)
A/J MGP_AJ_G0017991
protein coding gene Chr11:3219335-3228185 (-)
AKR/J MGP_AKRJ_G0017955
protein coding gene Chr11:3379794-3388644 (-)
BALB/cJ MGP_BALBcJ_G0017959
protein coding gene Chr11:3221857-3230699 (-)
C3H/HeJ MGP_C3HHeJ_G0017772
protein coding gene Chr11:3257409-3266260 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018411
protein coding gene Chr11:3461027-3469880 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016069
protein coding gene Chr11:3115897-3125170 (-)
CAST/EiJ MGP_CASTEiJ_G0017334
protein coding gene Chr11:3238697-3247554 (-)
CBA/J MGP_CBAJ_G0017747
protein coding gene Chr11:3852614-3861467 (-)
DBA/2J MGP_DBA2J_G0017857
protein coding gene Chr11:3137062-3145915 (-)
FVB/NJ MGP_FVBNJ_G0017849
protein coding gene Chr11:3150841-3159694 (-)
LP/J MGP_LPJ_G0017928
protein coding gene Chr11:3432674-3441516 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017875
protein coding gene Chr11:3418497-3427347 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018451
protein coding gene Chr11:3396221-3405074 (-)
PWK/PhJ MGP_PWKPhJ_G0017114
protein coding gene Chr11:3161945-3170879 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016911
protein coding gene Chr11:3346948-3355817 (-)
WSB/EiJ MGP_WSBEiJ_G0017388
protein coding gene Chr11:3228004-3236855 (-)



Homology
more
  • Human Ortholog
    DDX56, DEAD-box helicase 56
  • Vertebrate Orthologs
    9
  • Human Ortholog
    DDX56, DEAD-box helicase 56
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DDX21, DDX26, NOH61
  • Links
    NCBI Gene ID: 54606
    neXtProt AC: NX_Q9NY93
    UniProt: Q9NY93

  • Chr Location
    7p13; chr7:44565417-44574538 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 6498
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: DDX56
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000004393 Ensembl Gene Model | MGI Sequence Detail 8854 C57BL/6J ±  kb
transcript ENSMUST00000004507 Ensembl | MGI Sequence Detail 1956 Not Applicable  
polypeptide ENSMUSP00000004507 Ensembl | MGI Sequence Detail 546 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 122
    cDNA 121
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1915307
References
more
  • Summaries
    All 34
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:70953 Johnson RS, et al., Targeting of nonexpressed genes in embryonic stem cells via homologous recombination. Science. 1989 Sep 15;245(4923):1234-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory