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Echdc1 Gene Detail
Summary
  • Symbol
    Echdc1
  • Name
    enoyl Coenzyme A hydratase domain containing 1
  • Synonyms
    1700028A24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277169
    NCBI Gene: 52665
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:29313166-29347469 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 16.59 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277169
protein coding gene Chr10:29311997-29347469 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017112
protein coding gene Chr10:27490059-27525113 (+)
A/J MGP_AJ_G0017089
protein coding gene Chr10:26653958-26690421 (+)
AKR/J MGP_AKRJ_G0017049
protein coding gene Chr10:27086745-27120351 (+)
BALB/cJ MGP_BALBcJ_G0017052
protein coding gene Chr10:26771512-26803826 (+)
C3H/HeJ MGP_C3HHeJ_G0016872
protein coding gene Chr10:27336771-27375300 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017510
protein coding gene Chr10:28317843-28358789 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015208
protein coding gene Chr10:25187155-25220701 (+)
CAST/EiJ MGP_CASTEiJ_G0016451
protein coding gene Chr10:27394928-27431430 (+)
CBA/J MGP_CBAJ_G0016846
protein coding gene Chr10:29670190-29706054 (+)
DBA/2J MGP_DBA2J_G0016951
protein coding gene Chr10:26368673-26412593 (+)
FVB/NJ MGP_FVBNJ_G0016946
protein coding gene Chr10:25984486-26017824 (+)
LP/J MGP_LPJ_G0017028
protein coding gene Chr10:27458413-27495896 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016976
protein coding gene Chr10:29785608-29823330 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017546
protein coding gene Chr10:26985653-27020935 (+)
PWK/PhJ MGP_PWKPhJ_G0016233
protein coding gene Chr10:26130079-26165018 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016017
protein coding gene Chr10:26922751-26959204 (+)
WSB/EiJ MGP_WSBEiJ_G0016514
protein coding gene Chr10:27128429-27163938 (+)



Homology
more
  • Human Ortholog
    ECHDC1, ethylmalonyl-CoA decarboxylase 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ECHDC1, ethylmalonyl-CoA decarboxylase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ351K20.2, HEL-S-76, MMCD
  • Links
    NCBI Gene ID: 55862
    neXtProt AC: NX_Q9NTX5
    UniProt: Q9NTX5

  • Chr Location
    6q22.33; chr6:127288712-127343609 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 23106
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ECHDC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000019883 Ensembl Gene Model | MGI Sequence Detail 34304 C57BL/6J ±  kb
transcript ENSMUST00000020034 Ensembl | MGI Sequence Detail 3856 Not Applicable  
polypeptide ENSMUSP00000020034 Ensembl | MGI Sequence Detail 322 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 19
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914187, MGI:2143563, MGI:2143704
References
more
  • Summaries
    All 40
    Developmental Gene Expression 4
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory