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Stmn3 Gene Detail
Summary
  • Symbol
    Stmn3
  • Name
    stathmin-like 3
  • Synonyms
    9330161A03Rik, Sclip
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277137
    NCBI Gene: 20262
  • Gene Overview
    MyGene.info: STMN3
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:181306459-181314500 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 103.63 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277137
protein coding gene Chr2:181306459-181314500 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027018
protein coding gene Chr2:187888652-187896877 (-)
A/J MGP_AJ_G0026984
protein coding gene Chr2:180157811-180165826 (-)
AKR/J MGP_AKRJ_G0026955
protein coding gene Chr2:185555827-185563956 (-)
BALB/cJ MGP_BALBcJ_G0026993
protein coding gene Chr2:180630516-180638542 (-)
C3H/HeJ MGP_C3HHeJ_G0026734
protein coding gene Chr2:185913032-185921067 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027439
protein coding gene Chr2:193316741-193327228 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024803
protein coding gene Chr2:170840828-170848822 (-)
CAST/EiJ MGP_CASTEiJ_G0026193
protein coding gene Chr2:184172192-184180241 (-)
CBA/J MGP_CBAJ_G0026711
protein coding gene Chr2:200327173-200335255 (-)
DBA/2J MGP_DBA2J_G0026849
protein coding gene Chr2:179256164-179264222 (-)
FVB/NJ MGP_FVBNJ_G0026815
protein coding gene Chr2:177872177-177882164 (-)
LP/J MGP_LPJ_G0026950
protein coding gene Chr2:187915178-187923349 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026834
protein coding gene Chr2:202890491-202898947 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027498
protein coding gene Chr2:185528625-185537273 (-)
PWK/PhJ MGP_PWKPhJ_G0025929
protein coding gene Chr2:176777770-176785902 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025729
protein coding gene Chr2:182023816-182036745 (-)
WSB/EiJ MGP_WSBEiJ_G0026265
protein coding gene Chr2:186514951-186522988 (-)



Homology
more
  • Human Ortholog
    STMN3, stathmin 3
  • Vertebrate Orthologs
    8
  • Human Ortholog
    STMN3, stathmin 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SCLIP
  • Links
    NCBI Gene ID: 50861
    neXtProt AC: NX_Q9NZ72
    UniProt: Q9NZ72

  • Chr Location
    20q13.33; chr20:63639705-63653610 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20262 NCBI Gene Model | MGI Sequence Detail 8042 C57BL/6J ±  kb
transcript NM_009133 RefSeq | MGI Sequence Detail 1136 C57BL/6  
polypeptide O70166 UniProt | EBI | MGI Sequence Detail 180 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 114
    Genomic 1
    cDNA 110
    Primer pair 2
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2139015, MGI:2139543, MGI:2443740
References
more
  • Summaries
    All 42
    Developmental Gene Expression 8
    Gene Ontology 7
    Phenotypes 5
  • Earliest
    J:47689 Ozon S, et al., SCLIP: a novel SCG10-like protein of the stathmin family expressed in the nervous system. J Neurochem. 1998 Jun;70(6):2386-96
  • Latest
    J:244597 Cui W, et al., Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos. Sci Rep. 2016 Nov 21;6:37396

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory