Phf11d
Gene Detail

Symbol Name ID

Phf11d PHD finger protein 11D MGI:1277133

Synonyms

D14Ertd668e

Feature Type

protein coding gene

Genetic Map

Chromosome 14

31.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr14:59347407-59365470 bp, - strand From VEGA annotation of GRCm38   18064 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:87807  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken

Gene Tree: Phf11d

Human homologs

Human Homolog		PHF11, PHD finger protein 11
NCBI Gene ID		51131
neXtProt AC		NX_Q9UIL8
Human Synonyms		APY, BCAP, IGEL, IGER, IGHER, NYREN34, NY-REN-34
Human Chr (Location)		13q14.2; chr13:50069801-50103117 (+)  GRCh37.p10
Disease Associations		(2) Diseases Associated with Human PHF11

Alleles and phenotypes

All alleles(37) : Targeted(2) Gene trapped(35)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	regulation of transcription, DNA-dependent, transcription, DNA-dependent
Component	nucleus
Function	metal ion binding, zinc ion binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (52)    Tissues (12)    Images (25)
Theiler Stages: 22, 23, 28

Assay Type	Results
RNA in situ	48
RT-PCR	4

cDNA source data(19)
External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(21) cDNA(19) Primer pair(2)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000034689 (Evidence)
Ensembl Gene Model	ENSMUSG00000068245 (Evidence)
Entrez Gene	219132 (Evidence)
UniGene	479285
DFCI	TC1586768
DoTS	DT.528801, DT.94314953, DT.97356591
NIA Mouse Gene Index	U035637
Consensus CDS Project	CCDS27170.3
International Mouse Knockout Project Status	Phf11d

Sequences

Length	Strain/Species
genomic	OTTMUSG00000034689	VEGA Gene Model | MGI Sequence Detail	18064	C57BL/6J
transcript	OTTMUST00000088079	VEGA | MGI Sequence Detail	1130	Not Applicable
polypeptide	OTTMUSP00000047984	VEGA | MGI Sequence Detail	337	Not Applicable

All sequences(36) RefSeq(3) UniProt(2)

Polymorphisms

SNPs(80 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001965	Zinc finger, PHD-type
InterPro	IPR013083	Zinc finger, RING/FYVE/PHD-type

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)