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Phf11d
Gene Detail
 Symbol
Name
ID
Phf11d
PHD finger protein 11D
MGI:1277133
Synonyms D14Ertd668e
Feature Type protein coding gene
Genetic Map
Chromosome 14
31.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr14:59347407-59365470 bp, - strand
From VEGA annotation of GRCm38

  18064 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:87807  Vertebrate Homology Class
1 human; 4 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken

Gene Tree: Phf11d

Human
homologs
Human Homolog PHF11, PHD finger protein 11
NCBI Gene ID 51131
neXtProt AC  NX_Q9UIL8
Human Synonyms  APY, BCAP, IGEL, IGER, IGHER, NYREN34, NY-REN-34
Human Chr (Location)  13q14.2; chr13:49495610-49528987 (+)  GRCh38
Disease Associations  (2) Diseases Associated with Human PHF11
Mutations,
alleles, and
phenotypes
All mutations/alleles(37) : Gene trapped(35) Targeted(2)
Incidental mutations (data from APF )
Interactions
Phf11d interacts with 247 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleus
Function metal ion binding, zinc ion binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (52)    Tissues (12)    Images (25)
Theiler Stages: 22, 23, 28
Assay TypeResults
RNA in situ 48
RT-PCR 4
cDNA source data(19)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(21) cDNA(19) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000034689 (Evidence)
Ensembl Gene ModelENSMUSG00000068245 (Evidence)
Entrez Gene219132 (Evidence)
UniGene479285
DFCITC1586768
DoTSDT.528801, DT.94314953, DT.97356591
NIA Mouse Gene IndexU035637
Consensus CDS ProjectCCDS27170.3
International Mouse Knockout Project StatusPhf11d
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034689 VEGA Gene Model | MGI Sequence Detail 18064 C57BL/6J ±  kb
transcript OTTMUST00000088079 VEGA | MGI Sequence Detail 1130 Not Applicable 
polypeptide OTTMUSP00000047984 VEGA | MGI Sequence Detail 337 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(9) UniProt(2)
Polymorphisms SNPs within 2kb(90 from dbSNP Build 137)    SNPs within 2kb including multiple locations(92)
Protein-related
information
ResourceIDDescription
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory