Vdac3-ps1 Pseudogene Detail

Summary

• Symbol
  Vdac3-ps1
• Name
  voltage-dependent anion channel 3, pseudogene 1
• Synonyms
  ENSMUSG00000075053

• Feature Type
  pseudogene
• IDs
  MGI:1270159
  NCBI Gene: 22336
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:18205326-18206178 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 6.05 cM
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1270159	pseudogene	Chr13:18204902-18206214 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021090	protein coding gene	Chr14:20218803-20219668 (+)
A/J	MGP_AJ_G0022661	protein coding gene	Chr16:23926209-23927113 (-)
AKR/J	MGP_AKRJ_G0022635	protein coding gene	Chr16:24889563-24890467 (-)
BALB/cJ	MGP_BALBcJ_G0021042	protein coding gene	Chr14:19534771-19538094 (+)
C3H/HeJ	MGP_C3HHeJ_G0022430	protein coding gene	Chr16:25003458-25004362 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0020350	protein coding gene	Chr14:19965621-19966410 (+)
CBA/J	MGP_CBAJ_G0020792	protein coding gene	Chr14:21897507-21901822 (+)
DBA/2J	MGP_DBA2J_G0022533	protein coding gene	Chr16:23869525-23870429 (-)
FVB/NJ	MGP_FVBNJ_G0020898	protein coding gene	Chr14:19462839-19464348 (+)
LP/J	MGP_LPJ_G0020983	protein coding gene	Chr14:20515439-20516845 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020924	protein coding gene	Chr14:21250987-21252318 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020670	protein coding gene	Chr13:14918618-14919991 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0019922	protein coding gene	Chr14:19733458-19734764 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vdac3-ps1
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  672

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Interactions

• Vdac3-ps1 interacts with 67 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000075053 (Evidence)
• NCBI Gene
  22336

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075053	Ensembl Gene Model | MGI Sequence Detail	853	C57BL/6J
transcript	ENSMUST00000099736	Ensembl | MGI Sequence Detail	853	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGI:3704400

References

• Summaries
  All 6
• Earliest
  J:41957 Sampson MJ, et al., The murine voltage-dependent anion channel gene family. Conserved structure and function. J Biol Chem. 1997 Jul 25;272(30):18966-73

TSS for Vdac3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121542	Chr13:18206201-18206211 (-)	-28 bp