D5Ertd579e Gene Detail

Summary

• Symbol
  D5Ertd579e
• Name
  DNA segment, Chr 5, ERATO Doi 579, expressed
• Synonyms
  9030221A05Rik, A930018H20Rik, mKIAA0232

• Feature Type
  protein coding gene
• IDs
  MGI:1261849
  NCBI Gene: 320661
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:36600485-36696024 bp, - strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 19.18 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1261849	protein coding gene	Chr5:36600483-36696731 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029492	protein coding gene	Chr5:34945072-35015034 (-)
A/J	MGP_AJ_G0029459	protein coding gene	Chr5:33793693-33862790 (-)
AKR/J	MGP_AKRJ_G0029408	protein coding gene	Chr5:35081818-35146943 (-)
BALB/cJ	MGP_BALBcJ_G0029469	protein coding gene	Chr5:34306048-34373995 (-)
C3H/HeJ	MGP_C3HHeJ_G0029191	protein coding gene	Chr5:35087381-35155522 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0029923	protein coding gene	Chr5:36853028-36924406 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027160	protein coding gene	Chr5:31540441-31604589 (-)
CAST/EiJ	MGP_CASTEiJ_G0028600	protein coding gene	Chr5:34220045-34284839 (-)
CBA/J	MGP_CBAJ_G0029159	protein coding gene	Chr5:37744835-37819967 (-)
DBA/2J	MGP_DBA2J_G0029307	protein coding gene	Chr5:33934334-33999290 (-)
FVB/NJ	MGP_FVBNJ_G0029266	protein coding gene	Chr5:33412341-33480398 (-)
LP/J	MGP_LPJ_G0029392	protein coding gene	Chr5:35402477-35472065 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029296	protein coding gene	Chr5:38496067-38568641 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029956	protein coding gene	Chr5:34573611-34641643 (-)
PWK/PhJ	MGP_PWKPhJ_G0028325	protein coding gene	Chr5:33110621-33183424 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028156	protein coding gene	Chr5:34041351-34107660 (-)
WSB/EiJ	MGP_WSBEiJ_G0028681	protein coding gene	Chr5:34655512-34726890 (-)

Homology

• Human Ortholog
  KIAA0232, KIAA0232

• Vertebrate Orthologs
  9

• Human Ortholog
  KIAA0232, KIAA0232
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:28992

  NCBI Gene ID: 9778

  neXtProt AC: NX_Q92628

  UniProt: Q92628

  
  
• Chr Location
  4p16.1; chr4:6782732-6884172 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 19716
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: KIAA0232
• Gene Tree
  D5Ertd579e
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Gene trapped
  3
• Radiation induced
  4
• Spontaneous
  1
• Genomic Mutations
  8 involving D5Ertd579e
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

• External Resources
  FuncBase

Expression

• cDNA Data
  14

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• D5Ertd579e interacts with 303 markers (Mir1b, Mir7-1, Mir7-2, ...) View All

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  22
• UniProt
  4
• CCDS
  CCDS39073.1

• Ensembl
  ENSMUSG00000029190 (Evidence)
• NCBI Gene
  320661

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000029190	Ensembl Gene Model | MGI Sequence Detail	95540	C57BL/6J
transcript	ENSMUST00000031091	Ensembl | MGI Sequence Detail	6677	Not Applicable
polypeptide	ENSMUSP00000031091	Ensembl | MGI Sequence Detail	1396	Not Applicable

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR027871 Protein of unknown function DUF4603

Molecular
Reagents

• All nucleic 15

  cDNA 14

  Primer pair 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1925061, MGI:2444476

References

• Summaries
  All 45

  Diseases 1

  Gene Ontology 1

  Phenotypes 24
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D5Ertd579e:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50749	Chr5:36696056-36696068 (-)	-38 bp
Tssr50748	Chr5:36695992-36696041 (-)	7 bp
Tssr50747	Chr5:36621267-36621279 (-)	74,751 bp