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Fam49a Gene Detail
Summary
  • Symbol
    Fam49a
  • Name
    family with sequence similarity 49, member A
  • Synonyms
    2410157M17Rik, D12Ertd553e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1261783
    NCBI Gene: 76820
  • Gene Overview
    MyGene.info: FAM49A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:12262133-12376363 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 5.63 cM, cytoband A2
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1409 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1261783
protein coding gene Chr12:12262133-12380965 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019602
protein coding gene Chr12:9463514-9580532 (+)
A/J MGP_AJ_G0019569
protein coding gene Chr12:9170621-9280693 (+)
AKR/J MGP_AKRJ_G0019539
protein coding gene Chr12:9724022-9845433 (+)
BALB/cJ MGP_BALBcJ_G0019545
protein coding gene Chr12:9351390-9461594 (+)
C3H/HeJ MGP_C3HHeJ_G0019350
protein coding gene Chr12:9542333-9656584 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019993
protein coding gene Chr12:9816561-9935069 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017620
protein coding gene Chr12:8851464-8960881 (+)
CAST/EiJ MGP_CASTEiJ_G0018906
protein coding gene Chr12:9444503-9557468 (+)
CBA/J MGP_CBAJ_G0019321
protein coding gene Chr12:10489458-10613566 (+)
DBA/2J MGP_DBA2J_G0019434
protein coding gene Chr12:9122868-9232038 (+)
FVB/NJ MGP_FVBNJ_G0019425
protein coding gene Chr12:9039219-9146910 (+)
LP/J MGP_LPJ_G0019505
protein coding gene Chr12:9565345-9685038 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019459
protein coding gene Chr12:10300735-10418150 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020032
protein coding gene Chr12:9385573-9483071 (+)
PWK/PhJ MGP_PWKPhJ_G0018672
protein coding gene Chr12:9189161-9304432 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018462
protein coding gene Chr12:9503656-9618736 (+)
WSB/EiJ MGP_WSBEiJ_G0018957
protein coding gene Chr12:9451048-9565793 (+)



Homology
more
  • Human Ortholog
    FAM49A, family with sequence similarity 49 member A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM49A, family with sequence similarity 49 member A
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 81553
    neXtProt AC: NX_Q9H0Q0
    UniProt: Q9H0Q0

  • Chr Location
    2p24.2; chr2:16549459-16665866 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12657
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: FAM49A
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76820 NCBI Gene Model | MGI Sequence Detail 114231 C57BL/6J ±  kb
transcript NM_001364432 RefSeq | MGI Sequence Detail 9414 C57BL/6  
polypeptide Q8BHZ0 UniProt | EBI | MGI Sequence Detail 323 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 71
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1924070
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory