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Stbd1 Gene Detail
Summary
  • Symbol
    Stbd1
  • Name
    starch binding domain 1
  • Synonyms
    D530019K15Rik, D5Ertd593e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1261768
    NCBI Gene: 52331
Location & Maps
more
  • Sequence Map
    Chr5:92603041-92606579 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3539 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 47.21 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    STBD1, starch binding domain 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    STBD1, starch binding domain 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    GENEX3414, GENX-3414
  • Links
    NCBI Gene ID: 8987
    neXtProt AC: NX_O95210

  • Chr Location
    4q21.1; chr4:76306026-76311130 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    3
  • Genomic Mutations
    3 involving Stbd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000055606 VEGA Gene Model | MGI Sequence Detail 3539 C57BL/6J ±  kb
transcript OTTMUST00000137623 VEGA | MGI Sequence Detail 1985 Not Applicable  
polypeptide OTTMUSP00000072455 VEGA | MGI Sequence Detail 338 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    43 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000029772 starch-binding domain-containing protein 1
  • InterPro Domains
    IPR013784 Carbohydrate-binding-like fold
    IPR002044 Carbohydrate binding module family 20
    IPR013783 Immunoglobulin-like fold
Molecular
Reagents
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  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915506
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory