About   Help   FAQ
Dgcr6
Gene Detail
 Symbol
Name
ID
Dgcr6
DiGeorge syndrome critical region gene 6
MGI:1202877
Feature Type protein coding gene
Genetic Map
Chromosome 16
11.19 cM, cytoband B2
Detailed Genetic Map ± 1 cM


Mapping data(10)
Sequence Map
Chr16:18052860-18071632 bp, + strand
From VEGA annotation of GRCm38

  18773 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4152  Vertebrate Homology Class
1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque

Gene Tree: Dgcr6

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Targeted(7)
Genomic Mutations involving Dgcr6 (4)
Alleles Annotated to Human Diseases(2)   
Interactions
Dgcr6 interacts with 59 markers (Mir1a-1, Mir1a-2, Mir16-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (80)    Tissues (60)    Images (12)
Theiler Stages: 10, 12, 16, 17, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28
Assay TypeResults
RNA in situ 36
Northern blot 12
RT-PCR 32
cDNA source data(50)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(80) Genomic(29) cDNA(50) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000028179 (Evidence)
Ensembl Gene ModelENSMUSG00000003531 (Evidence)
Entrez Gene13353 (Evidence)
UniGene27155
DFCITC1580739, TC1638998, TC1647482, TC1658596
Consensus CDS ProjectCCDS28016.1
International Mouse Knockout Project StatusDgcr6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028179 VEGA Gene Model | MGI Sequence Detail 18773 C57BL/6J ±  kb
transcript OTTMUST00000069810 VEGA | MGI Sequence Detail 1415 Not Applicable 
polypeptide OTTMUSP00000035508 VEGA | MGI Sequence Detail 233 Not Applicable 

For the selected sequences
All sequences(78) RefSeq(15) UniProt(6)
Polymorphisms SNPs within 2kb(48 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010849 DiGeorge syndrome critical 6
Protein Ontology PR:000006439 protein DGCR6
References (Earliest) J:44451 Botta A, et al., Comparative mapping of the DiGeorge syndrome region in mouse shows inconsistent gene order and differential degree of gene conservation. Mamm Genome. 1997 Dec;8(12):890-5
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:2146581

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/09/2014
MGI 5.19
The Jackson Laboratory