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Tcf7l1 Gene Detail
Summary
  • Symbol
    Tcf7l1
  • Name
    transcription factor 7 like 1 (T cell specific, HMG box)
  • Synonyms
    Tcf3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1202876
    NCBI Gene: 21415
Location & Maps
more
  • Sequence Map
    Chr6:72626378-72789254 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      162877 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    TCF7L1, transcription factor 7-like 1 (T-cell specific, HMG-box)
  • Vertebrate Orthologs
    11
  • Human Ortholog
    TCF7L1, transcription factor 7-like 1 (T-cell specific, HMG-box)
    Orthology source: HomoloGene
  • Synonyms
    TCF3, TCF-3
  • Links
    NCBI Gene ID: 83439
    neXtProt AC: NX_Q9HCS4

  • Chr Location
    2p11.2; chr2:85133460-85310388 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 7563
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;2 zebrafish
  • HCOP
    human homology predictions: TCF7L1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    46 phenotypes from 5 alleles in 6 genetic backgrounds
    7 phenotypes from multigenic genotypes
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryogenesis
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
tumorigenesis
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    130
  • Gene trapped
    123
  • Spontaneous
    1
  • Targeted
    6
  • Genomic Mutations
    1 involving Tcf7l1
  • Incidental Mutations
Animals homozygous for a targeted mutation exhibit severe embryological defects particularly affecting the cardiovascular system, nervous system, and digestive system. No homozygous embryos survive beyond E11.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021200 VEGA Gene Model | MGI Sequence Detail 162877 C57BL/6J ±  kb
transcript OTTMUST00000050225 VEGA | MGI Sequence Detail 1888 Not Applicable  
polypeptide OTTMUSP00000065208 VEGA | MGI Sequence Detail 599 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    1035 from dbSNP Build 137
Protein
Information
less
Molecular
Reagents
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  • All nucleic 53
    cDNA 48
    Primer pair 4
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 95
    Developmental Gene Expression 54
    Gene Ontology 12
    Phenotypes 18
  • Earliest
    J:45934 Korinek V, et al., Two members of the Tcf family implicated in Wnt/beta-catenin signaling during embryogenesis in the mouse. Mol Cell Biol. 1998 Mar;18(3):1248-56
  • Latest
    J:221338 Hammond E, et al., The Wnt effector transcription factor 7-like 2 positively regulates oligodendrocyte differentiation in a manner independent of Wnt/beta-catenin signaling. J Neurosci. 2015 Mar 25;35(12):5007-22

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
01/26/2016
MGI 6.02
The Jackson Laboratory