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Rnf4 Gene Detail
Summary
  • Symbol
    Rnf4
  • Name
    ring finger protein 4
  • Synonyms
    Gtrgeo8
  • Feature Type
    protein coding gene
  • IDs
    MGI:1201691
    NCBI Gene: 19822
  • Gene Overview
    MyGene.info: RNF4
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:34336250-34353445 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 17.87 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1201691
protein coding gene Chr5:34336250-34355629 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029463
protein coding gene Chr5:32558506-32581533 (+)
A/J MGP_AJ_G0029430
protein coding gene Chr5:31492861-31512154 (+)
AKR/J MGP_AKRJ_G0029379
protein coding gene Chr5:32701472-32720755 (+)
BALB/cJ MGP_BALBcJ_G0029440
protein coding gene Chr5:32029681-32048948 (+)
C3H/HeJ MGP_C3HHeJ_G0029162
protein coding gene Chr5:32740925-32760221 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029894
protein coding gene Chr5:34452026-34471334 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027131
protein coding gene Chr5:29265480-29286734 (+)
CAST/EiJ MGP_CASTEiJ_G0028571
protein coding gene Chr5:31810807-31829940 (+)
CBA/J MGP_CBAJ_G0029130
protein coding gene Chr5:35212724-35232484 (+)
DBA/2J MGP_DBA2J_G0029278
protein coding gene Chr5:31664197-31683461 (+)
FVB/NJ MGP_FVBNJ_G0029237
protein coding gene Chr5:31106447-31125783 (+)
LP/J MGP_LPJ_G0029363
protein coding gene Chr5:32990181-33009496 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029267
protein coding gene Chr5:36092281-36111641 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029927
protein coding gene Chr5:32213221-32234932 (+)
PWK/PhJ MGP_PWKPhJ_G0028296
protein coding gene Chr5:30804688-30824571 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028127
protein coding gene Chr5:31655071-31674317 (+)
WSB/EiJ MGP_WSBEiJ_G0028652
protein coding gene Chr5:32289073-32310047 (+)



Homology
more
  • Human Ortholog
    RNF4, ring finger protein 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RNF4, ring finger protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RES4-26, SLX5, SNURF
  • Links
    NCBI Gene ID: 6047
    neXtProt AC: NX_P78317
    UniProt: P78317

  • Chr Location
    4p16.3; chr4:2469068-2515859 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation display lethality throughout fetal growth and development with ventricular septal defects and cardiac insufficiency. MEFs from homozygous mice display global DNA hypermethylation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 19822 NCBI Gene Model | MGI Sequence Detail 17196 C57BL/6J ±  kb
    transcript NM_011278 RefSeq | MGI Sequence Detail 3091 C57BL/6  
    polypeptide Q9QZS2 UniProt | EBI | MGI Sequence Detail 194 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 28
      cDNA 28

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2141039, MGI:894658
    References
    more
    • Summaries
      All 70
      Developmental Gene Expression 9
      Diseases 1
      Gene Ontology 8
      Phenotypes 29
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:224272 Sun H, et al., Multiple Arkadia/RNF111 structures coordinate its Polycomb body association and transcriptional control. Mol Cell Biol. 2014 Aug;34(16):2981-95

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory