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Atg13 Gene Detail
Summary
  • Symbol
    Atg13
  • Name
    autophagy related 13
  • Synonyms
    1110053A20Rik, D2Ertd391e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196429
    NCBI Gene: 51897
  • Gene Overview
    MyGene.info: ATG13
Location & Maps
more
  • Sequence Map
    Chr2:91674618-91710576 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      35959 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.63 cM
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    ATG13, autophagy related 13
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATG13, autophagy related 13
    Orthology source: HGNC, HomoloGene
  • Synonyms
    KIAA0652, PARATARG8
  • Links
    NCBI Gene ID: 9776
    neXtProt AC: NX_O75143

  • Chr Location
    11p11.2; chr11:46617276-46676019 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 32229
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: ATG13
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    193
  • Chemically induced (other)
    1
  • Gene trapped
    187
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    4 involving Atg13
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000014308 VEGA Gene Model | MGI Sequence Detail 35959 C57BL/6J ±  kb
transcript OTTMUST00000033751 VEGA | MGI Sequence Detail 3604 Not Applicable  
polypeptide OTTMUSP00000015122 VEGA | MGI Sequence Detail 516 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    167 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031005 autophagy-related protein 13
  • InterPro Domains
    IPR018731 Autophagy-related protein 13
Molecular
Reagents
less
  • All nucleic 114
    cDNA 113
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916084
References
more
  • Summaries
    All 38
    Developmental Gene Expression 1
    Gene Ontology 8
    Phenotypes 12
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:222854 Laguna A, et al., Dopaminergic control of autophagic-lysosomal function implicates Lmx1b in Parkinson's disease. Nat Neurosci. 2015 Jun;18(6):826-35

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/24/2016
MGI 6.04
The Jackson Laboratory