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Atg13 Gene Detail
Summary
  • Symbol
    Atg13
  • Name
    autophagy related 13
  • Synonyms
    1110053A20Rik, D2Ertd391e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196429
    NCBI Gene: 51897
  • Gene Overview
    MyGene.info: ATG13
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:91674618-91710576 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.63 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196429
protein coding gene Chr2:91674612-91710599 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026155
protein coding gene Chr2:93031805-93073947 (-)
A/J MGP_AJ_G0026116
protein coding gene Chr2:89294286-89331225 (-)
AKR/J MGP_AKRJ_G0026097
protein coding gene Chr2:91762728-91798233 (-)
BALB/cJ MGP_BALBcJ_G0026125
protein coding gene Chr2:89478290-89514356 (-)
C3H/HeJ MGP_C3HHeJ_G0025876
protein coding gene Chr2:92045880-92088030 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026576
protein coding gene Chr2:96279013-96314444 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023967
protein coding gene Chr2:85792298-85832371 (-)
CAST/EiJ MGP_CASTEiJ_G0025341
protein coding gene Chr2:92595228-92636721 (-)
CBA/J MGP_CBAJ_G0025854
protein coding gene Chr2:99581075-99623039 (-)
DBA/2J MGP_DBA2J_G0025990
protein coding gene Chr2:88896900-88932738 (-)
FVB/NJ MGP_FVBNJ_G0025953
protein coding gene Chr2:87995668-88032409 (-)
LP/J MGP_LPJ_G0026094
protein coding gene Chr2:93241854-93280296 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025979
protein coding gene Chr2:102602972-102641373 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026630
protein coding gene Chr2:91837567-91881898 (-)
PWK/PhJ MGP_PWKPhJ_G0025076
protein coding gene Chr2:88630537-88669988 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024877
protein coding gene Chr2:91415952-91451653 (-)
WSB/EiJ MGP_WSBEiJ_G0025408
protein coding gene Chr2:92436624-92475847 (-)



Homology
more
  • Human Ortholog
    ATG13, autophagy related 13
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATG13, autophagy related 13
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KIAA0652, PARATARG8
  • Links
    NCBI Gene ID: 9776
    neXtProt AC: NX_O75143
    UniProt: O75143

  • Chr Location
    11p11.2; chr11:46617276-46676019 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32229
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ATG13
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027244 Ensembl Gene Model | MGI Sequence Detail 35959 C57BL/6J ±  kb
transcript ENSMUST00000028678 Ensembl | MGI Sequence Detail 3604 Not Applicable  
polypeptide ENSMUSP00000028678 Ensembl | MGI Sequence Detail 516 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 115
    cDNA 114
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916084
References
more
  • Summaries
    All 47
    Developmental Gene Expression 1
    Gene Ontology 10
    Phenotypes 14
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:245394 Suzuki H, et al., Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation. Nat Struct Mol Biol. 2015 Jul;22(7):572-80

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory