About   Help   FAQ
Slc25a39
Gene Detail
Symbol

Name
ID
Slc25a39
solute carrier family 25, member 39
MGI:1196386
Synonyms
3010027G13Rik, D11Ertd333e
Feature Type
protein coding gene
Genetic Map
Chromosome 11
66.29 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr11:102402985-102407946 bp, - strand
From VEGA annotation of GRCm38

  4962 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:69200  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc25a39

Human
homologs
Human Homolog SLC25A39, solute carrier family 25, member 39
NCBI Gene ID 51629
neXtProt AC  NX_Q9BZJ4
Human Synonyms  CGI69
Human Chr (Location)  17q12; chr17:44319625-44324849 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(18) : Gene trapped(16) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc25a39 interacts with 54 markers (Mir24-1, Mir24-2, Mir30c-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process heme biosynthetic process, transport
Component integral component of membrane, membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (215)    Tissues (46)    Images (45)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 215
cDNA source data(17)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(17) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000002817 (Evidence)
Ensembl Gene ModelENSMUSG00000018677 (Evidence)
Entrez Gene68066 (Evidence)
DFCITC1572475, TC1598923, TC1655658, TC1600787, TC1658167
NIA Mouse Gene IndexU033477
Consensus CDS ProjectCCDS25498.1
International Mouse Knockout Project StatusSlc25a39
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000002817 VEGA Gene Model | MGI Sequence Detail 4962 C57BL/6J ±  kb
transcript OTTMUST00000005703 VEGA | MGI Sequence Detail 1685 Not Applicable 
polypeptide OTTMUSP00000002717 VEGA | MGI Sequence Detail 359 Not Applicable 

For the selected sequences
All sequences(116) RefSeq(8) UniProt(21)
Polymorphisms
SNPs within 2kb(19 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023395 Mitochondrial carrier domain
InterPro IPR018108 Mitochondrial substrate/solute carrier
Protein Ontology PR:000032515 solute carrier family 25 member 39
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:1915316

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/09/2014
MGI 5.20
The Jackson Laboratory