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Ncald Gene Detail
Summary
  • Symbol
    Ncald
  • Name
    neurocalcin delta
  • Synonyms
    D030020D09Rik, D15Ertd412e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196326
    NCBI Gene: 52589
Location & Maps
more
  • Sequence Map
    Chr15:37366175-37792570 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      426396 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 14.94 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    NCALD, neurocalcin delta
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCALD, neurocalcin delta
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 83988
    neXtProt AC: NX_P61601

  • Chr Location
    8q22.3; chr8:101686542-102124907 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 49978
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: NCALD
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    16 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Ncald
  • Incidental Mutations
Mice homozygous for a targeted allele could not be generated. Mice heterozygous for the targeted allele exhibit increased systemic arterial systolic blood pressure.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028025 VEGA Gene Model | MGI Sequence Detail 426396 C57BL/6J ±  kb
transcript OTTMUST00000069408 VEGA | MGI Sequence Detail 3733 Not Applicable  
polypeptide OTTMUSP00000035249 VEGA | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2404 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 86
    cDNA 85
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
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MGI:1925700, MGI:2146078
References
more
  • Summaries
    All 39
    Developmental Gene Expression 6
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:231595 Gurdziel K, et al., Transcriptome of the inner circular smooth muscle of the developing mouse intestine: Evidence for regulation of visceral smooth muscle genes by the hedgehog target gene, cJun. Dev Dyn. 2016 May;245(5):614-26

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory