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Ncald Gene Detail
Summary
  • Symbol
    Ncald
  • Name
    neurocalcin delta
  • Synonyms
    D030020D09Rik, D15Ertd412e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196326
    NCBI Gene: 52589
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:37366175-37792570 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 14.94 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2404 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196326
protein coding gene Chr15:37366175-37792572 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021802
protein coding gene Chr15:35811656-36263627 (-)
A/J MGP_AJ_G0021762
protein coding gene Chr15:34448496-34874907 (-)
AKR/J MGP_AKRJ_G0021742
protein coding gene Chr15:35439402-35889929 (-)
BALB/cJ MGP_BALBcJ_G0021769
protein coding gene Chr15:34488619-34918986 (-)
C3H/HeJ MGP_C3HHeJ_G0021543
protein coding gene Chr15:35403649-35847266 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022208
protein coding gene Chr15:37224029-37683205 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019745
protein coding gene Chr15:32241294-32655713 (-)
CAST/EiJ MGP_CASTEiJ_G0021060
protein coding gene Chr15:35789886-36247544 (-)
CBA/J MGP_CBAJ_G0021512
protein coding gene Chr15:38397456-38901070 (-)
DBA/2J MGP_DBA2J_G0021636
protein coding gene Chr15:34284823-34714809 (-)
FVB/NJ MGP_FVBNJ_G0021614
protein coding gene Chr15:33689312-34111265 (-)
LP/J MGP_LPJ_G0021706
protein coding gene Chr15:35686487-36121833 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021638
protein coding gene Chr15:41446794-41915654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022231
protein coding gene Chr15:35591941-36042376 (-)
PWK/PhJ MGP_PWKPhJ_G0020804
protein coding gene Chr15:34312158-34749173 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020642
protein coding gene Chr15:35279494-35727073 (-)
WSB/EiJ MGP_WSBEiJ_G0021115
protein coding gene Chr15:35545544-35983540 (-)



Homology
more
  • Human Ortholog
    NCALD, neurocalcin delta
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCALD, neurocalcin delta
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 83988
    neXtProt AC: NX_P61601
    UniProt: P61601

  • Chr Location
    8q22.3; chr8:101686542-102124907 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 49978
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: NCALD
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotypes from 2 alleles in 2 genetic backgrounds
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted allele could not be generated. Mice heterozygous for the targeted allele exhibit increased systemic arterial systolic blood pressure.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000051359 Ensembl Gene Model | MGI Sequence Detail 426396 C57BL/6J ±  kb
    transcript ENSMUST00000168992 Ensembl | MGI Sequence Detail 3538 Not Applicable  
    polypeptide ENSMUSP00000130126 Ensembl | MGI Sequence Detail 193 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 87
      cDNA 86
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1925700, MGI:2146078
    References
    more
    • Summaries
      All 47
      Developmental Gene Expression 6
      Gene Ontology 5
      Phenotypes 14
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:246066 Sundberg JP, et al., Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program. PLoS One. 2017;12(7):e0180682

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    03/13/2019
    MGI 6.13
    The Jackson Laboratory