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Trmt10c Gene Detail
Summary
  • Symbol
    Trmt10c
  • Name
    tRNA methyltransferase 10C, mitochondrial RNase P subunit
  • Synonyms
    1300018J16Rik, D16Ertd454e, Rg9mtd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196261
    NCBI Gene: 52575
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:56033720-56037774 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 33.79 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196261
protein coding gene Chr16:56032609-56037819 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022886
protein coding gene Chr16:55136805-55142023 (-)
A/J MGP_AJ_G0022853
protein coding gene Chr16:52765089-52770299 (-)
AKR/J MGP_AKRJ_G0022825
protein coding gene Chr16:54432615-54437825 (-)
BALB/cJ MGP_BALBcJ_G0022853
protein coding gene Chr16:52866764-52871974 (-)
C3H/HeJ MGP_C3HHeJ_G0022616
protein coding gene Chr16:54622077-54627287 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023301
protein coding gene Chr16:56679960-56685170 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020812
protein coding gene Chr16:52483294-52488520 (-)
CAST/EiJ MGP_CASTEiJ_G0022143
protein coding gene Chr16:55024512-55029740 (-)
CBA/J MGP_CBAJ_G0022589
protein coding gene Chr16:58944414-58949531 (-)
DBA/2J MGP_DBA2J_G0022721
protein coding gene Chr16:52518777-52523987 (-)
FVB/NJ MGP_FVBNJ_G0022696
protein coding gene Chr16:52285338-52290556 (-)
LP/J MGP_LPJ_G0022788
protein coding gene Chr16:54948409-54953600 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022714
protein coding gene Chr16:59253671-59258969 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023316
protein coding gene Chr16:54591128-54596338 (-)
PWK/PhJ MGP_PWKPhJ_G0021882
protein coding gene Chr16:52866724-52871848 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021712
protein coding gene Chr16:54383775-54388994 (-)
WSB/EiJ MGP_WSBEiJ_G0022187
protein coding gene Chr16:54616109-54621319 (-)



Homology
more
  • Human Ortholog
    TRMT10C, tRNA methyltransferase 10C, mitochondrial RNase P subunit
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRMT10C, tRNA methyltransferase 10C, mitochondrial RNase P subunit
    Orthology source: HomoloGene, HGNC
  • Synonyms
    COXPD30, HNYA, MRPP1, RG9MTD1
  • Links
    NCBI Gene ID: 54931
    neXtProt AC: NX_Q7L0Y3
    UniProt: Q7L0Y3

  • Chr Location
    3q12.3; chr3:101561836-101566446 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52575 NCBI Gene Model | MGI Sequence Detail 4055 C57BL/6J ±  kb
transcript NM_029092 RefSeq | MGI Sequence Detail 1858 C57BL/6  
polypeptide Q3UFY8 UniProt | EBI | MGI Sequence Detail 414 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    cDNA 40
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1922015
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 7
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:226028 Lewandowski JP, et al., Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Dev Biol. 2015 Oct 1;406(1):92-103

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory