Zcchc10 Gene Detail

Summary

• Symbol
  Zcchc10
• Name
  zinc finger, CCHC domain containing 10
• Synonyms
  2410141K03Rik, D11Ertd416e

• Feature Type
  protein coding gene
• IDs
  MGI:1196228
  NCBI Gene: 67966
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr11:53215516-53224128 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.92 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1196228	protein coding gene	Chr11:53215506-53224128 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018288	protein coding gene	Chr11:52698628-52707224 (+)
A/J	MGP_AJ_G0018257	protein coding gene	Chr11:50723850-50732478 (+)
AKR/J	MGP_AKRJ_G0018227	protein coding gene	Chr11:52377639-52387448 (+)
BALB/cJ	MGP_BALBcJ_G0018228	protein coding gene	Chr11:51077594-51086688 (+)
C3H/HeJ	MGP_C3HHeJ_G0018039	protein coding gene	Chr11:52342428-52352323 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018680	protein coding gene	Chr11:54289889-54298498 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016330	protein coding gene	Chr11:48257985-48267731 (+)
CAST/EiJ	MGP_CASTEiJ_G0017604	protein coding gene	Chr11:52391341-52409565 (+)
CBA/J	MGP_CBAJ_G0018014	protein coding gene	Chr11:56848870-56857420 (+)
DBA/2J	MGP_DBA2J_G0018124	protein coding gene	Chr11:50470731-50479327 (+)
FVB/NJ	MGP_FVBNJ_G0018116	protein coding gene	Chr11:50111198-50119796 (+)
LP/J	MGP_LPJ_G0018198	protein coding gene	Chr11:53140553-53149163 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018140	protein coding gene	Chr11:58170765-58179370 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018722	protein coding gene	Chr11:52408095-52416674 (+)
PWK/PhJ	MGP_PWKPhJ_G0017379	protein coding gene	Chr11:50980748-50990828 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017174	protein coding gene	Chr11:52214279-52225548 (+)
WSB/EiJ	MGP_WSBEiJ_G0017651	protein coding gene	Chr11:52038321-52046923 (+)

Homology

• Human Ortholog
  ZCCHC10, zinc finger CCHC-type containing 10

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ZCCHC10, zinc finger CCHC-type containing 10
  
• Links
  HGNC:25954

  NCBI Gene ID: 54819

  neXtProt AC: NX_Q8TBK6

  UniProt: Q8TBK6

  
  
• Chr Location
  5q31.1; chr5:132996985-133026604 (-)  GRCh38

---

• MGI Vertebrate Homology
  Zcchc10 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: ZCCHC10
• Gene Tree
  Zcchc10
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  99
• Chemically induced (other)
  1
• Endonuclease-mediated
  2
• Gene trapped
  94
• Targeted
  2
• Genomic Mutations
  1 involving Zcchc10
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  21 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  764
• Tissues
  24
• cDNA Data
  10
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase zcchc10

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS24675.1

• Ensembl
  ENSMUSG00000018239 (Evidence)
• NCBI Gene
  67966

Representative Sequences			Length	Strain/Species
genomic	67966	NCBI Gene Model | MGI Sequence Detail	8613	C57BL/6J
transcript	NM_026479	RefSeq | MGI Sequence Detail	1257	ZRU/MplStud
polypeptide	Q9CX48	UniProt | EBI | MGI Sequence Detail	178	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000031233 zinc finger CCHC domain-containing protein 10
  (term hierarchy)
• InterPro Domains
  IPR036875 Zinc finger, CCHC-type superfamily

Molecular
Reagents

• All nucleic 13

  cDNA 10

  Primer pair 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1915216, MGI:2144042

References

• Summaries
  All 32

  Developmental Gene Expression 2

  Gene Ontology 1

  Phenotypes 9
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Zcchc10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101382	Chr11:53215501-53215531 (+)	0 bp
Tssr101383	Chr11:53221401-53221436 (+)	5,903 bp
Tssr101384	Chr11:53221439-53221446 (+)	5,927 bp
Tssr101385	Chr11:53222982-53222998 (+)	7,474 bp
Tssr101386	Chr11:53223013-53223034 (+)	7,508 bp
Tssr101387	Chr11:53223210-53223221 (+)	7,700 bp
Tssr101388	Chr11:53223294-53223308 (+)	7,785 bp
Tssr101389	Chr11:53223312-53223342 (+)	7,811 bp
Tssr101390	Chr11:53223356-53223368 (+)	7,846 bp