Gpc5
Gene Detail

Symbol Name ID

Gpc5 glypican 5 MGI:1194894

Synonyms

A230034F01Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 14

59.43 cM, cytoband E4
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr14:115092215-116525179 bp, + strand From VEGA annotation of GRCm38   1432965 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:3285  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: glypican
Gene Tree: Gpc5

Human homologs

Human Homolog		GPC5, glypican 5
NCBI Gene ID		2262
neXtProt AC		NX_P78333
Human Chr (Location)		13q32; chr13:92050935-93519490 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(3) : Targeted(2) Gene trapped(1)

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Component	anchored to membrane, extracellular region, ...
Function	heparan sulfate proteoglycan binding

External Resources: FuncBase

Expression

Literature Summary: (7 records)
Data Summary: Results (91)    Tissues (12)    Images (21)
Theiler Stages: 16, 23, 28

Assay Type	Results
RNA in situ	89
RT-PCR	2

cDNA source data(8)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(9) cDNA(8) Primer pair(1)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000042137 (Evidence)
Ensembl Gene Model	ENSMUSG00000022112 (Evidence)
Entrez Gene	103978 (Evidence)
UniGene	320791
DFCI	TC1585512, TC1595443
DoTS	DT.55277509, DT.91421573, DT.97386773
NIA Mouse Gene Index	U015956
Consensus CDS Project	CCDS27329.1
International Mouse Knockout Project Status	Gpc5

Sequences

Length	Strain/Species
genomic	OTTMUSG00000042137	VEGA Gene Model | MGI Sequence Detail	1432965	C57BL/6J
transcript	OTTMUST00000110573	VEGA | MGI Sequence Detail	2837	Not Applicable
polypeptide	OTTMUSP00000061712	VEGA | MGI Sequence Detail	645	Not Applicable

All sequences(36) RefSeq(2) UniProt(5)

Polymorphisms

SNPs(2999 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001863	Glypican
InterPro	IPR019803	Glypican, conserved site
Protein Ontology	PR:000008167	glypican-5

References

(Earliest) J:45283 Saunders S, et al., Expression of the cell surface proteoglycan glypican-5 is developmentally regulated in kidney, limb, and brain. Dev Biol. 1997 Oct 1;190(1):78-93
(Latest) J:188254 Budry L, et al., The selector gene Pax7 dictates alternate pituitary cell fates through its pioneer action on chromatin remodeling. Genes Dev. 2012 Oct 15;26(20):2299-310
All references(34)

Other accession IDs

MGI:2442523