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Kcnj10 Gene Detail
Summary
  • Symbol
    Kcnj10
  • Name
    potassium inwardly-rectifying channel, subfamily J, member 10
  • Synonyms
    BIR10, BIRK-1, Kir1.2, Kir4.1, Kir4.1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1194504
    NCBI Gene: 16513
  • Gene Overview
    MyGene.info: KCNJ10
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:172341210-172374085 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 79.69 cM
  • Mapping Data
    10 experiments
  • Sequence Tag
Strain
Comparison
more
  • SNPs within 2kb
    374 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1194504
protein coding gene Chr1:172341210-172374085 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016786
protein coding gene Chr1:178201998-178236295 (+)
A/J MGP_AJ_G0016765
protein coding gene Chr1:170907628-170941686 (+)
AKR/J MGP_AKRJ_G0016731
protein coding gene Chr1:176071537-176104519 (+)
BALB/cJ MGP_BALBcJ_G0016726
protein coding gene Chr1:171453728-171486930 (+)
C3H/HeJ MGP_C3HHeJ_G0016550
protein coding gene Chr1:176645170-176678182 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017188
protein coding gene Chr1:184116961-184153987 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014894
protein coding gene Chr1:162610829-162644073 (+)
CAST/EiJ MGP_CASTEiJ_G0016130
protein coding gene Chr1:176014792-176052199 (+)
CBA/J MGP_CBAJ_G0016524
protein coding gene Chr1:190658978-190694943 (+)
DBA/2J MGP_DBA2J_G0016631
protein coding gene Chr1:169844200-169877151 (+)
FVB/NJ MGP_FVBNJ_G0016628
protein coding gene Chr1:168099691-168132586 (+)
LP/J MGP_LPJ_G0016702
protein coding gene Chr1:179291240-179324248 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016655
protein coding gene Chr1:197906679-197939646 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017224
protein coding gene Chr1:175941065-175974973 (+)
PWK/PhJ MGP_PWKPhJ_G0015916
protein coding gene Chr1:169222539-169255794 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015698
protein coding gene Chr1:174892671-174924665 (+)
WSB/EiJ MGP_WSBEiJ_G0016192
protein coding gene Chr1:176095446-176133412 (+)



Homology
more
  • Human Ortholog
    KCNJ10, potassium voltage-gated channel subfamily J member 10
  • Vertebrate Orthologs
    10
  • Human Ortholog
    KCNJ10, potassium voltage-gated channel subfamily J member 10
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BIRK-10, KCNJ13-PEN, KIR1.2, KIR4.1, SESAME
  • Links
    NCBI Gene ID: 3766
    neXtProt AC: NX_P78508
    UniProt: P78508

  • Chr Location
    1q23.2; chr1:160037467-160070261 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with Kcnj10 mouse models; 2 with human KCNJ10 associations

Human Disease Mouse Models
      
IDs
View 2 models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    74 phenotypes from 3 alleles in 4 genetic backgrounds
    32 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous mutant mice show increased input resistance and high depolarization of retinal Muller cells, loss of the endocochlear potential, motor coordination deficits and hindlimb paralysis, and a hypomyelination and spongiform vacuolation in the spinalcord associated with severe axonal pathology.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 16513 NCBI Gene Model | MGI Sequence Detail 32876 C57BL/6J ±  kb
    transcript NM_001039484 RefSeq | MGI Sequence Detail 5407 C57BL/6  
    polypeptide Q9JM63 UniProt | EBI | MGI Sequence Detail 379 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000001979 ATP-sensitive inward rectifier potassium channel 10
    • InterPro Domains
      IPR014756 Immunoglobulin E-set
      IPR016449 Potassium channel, inwardly rectifying, Kir
      IPR003269 Potassium channel, inwardly rectifying, Kir1.2
      IPR013518 Potassium channel, inwardly rectifying, Kir, cytoplasmic
    Molecular
    Reagents
    less
    • All nucleic 43
      Genomic 9
      cDNA 32
      Primer pair 2

      Microarray probesets 2
    References
    more
    • Summaries
      All 88
      Developmental Gene Expression 12
      Diseases 2
      Gene Ontology 16
      Phenotypes 32
    • Earliest
      J:44256 Tada Y, et al., Assignment of the glial inwardly rectifying potassium channel KAB-2/Kir4.1 (Kcnj10) gene to the distal region of mouse chromosome 1. Genomics. 1997 Nov 1;45(3):629-30
    • Latest
      J:263279 Larson VA, et al., Oligodendrocytes control potassium accumulation in white matter and seizure susceptibility. Elife. 2018 Mar 29;7

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory