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Gsg1 Gene Detail
Summary
  • Symbol
    Gsg1
  • Name
    germ cell associated 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1194499
    NCBI Gene: 14840
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:135237329-135254336 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 66.07 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    182 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1194499
protein coding gene Chr6:135237326-135254351 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031417
protein coding gene Chr6:139584630-139602780 (-)
A/J MGP_AJ_G0031393
protein coding gene Chr6:134067794-134084776 (-)
AKR/J MGP_AKRJ_G0031320
protein coding gene Chr6:138150136-138167122 (-)
BALB/cJ MGP_BALBcJ_G0031399
protein coding gene Chr6:133903385-133923894 (-)
C3H/HeJ MGP_C3HHeJ_G0031121
protein coding gene Chr6:138187712-138204728 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031859
protein coding gene Chr6:143379113-143397162 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028991
protein coding gene Chr6:133223230-133240811 (-)
CAST/EiJ MGP_CASTEiJ_G0030490
protein coding gene Chr6:137629698-137646798 (-)
CBA/J MGP_CBAJ_G0031080
protein coding gene Chr6:148712130-148729101 (-)
DBA/2J MGP_DBA2J_G0031238
protein coding gene Chr6:132918995-132939222 (-)
FVB/NJ MGP_FVBNJ_G0031188
protein coding gene Chr6:131842420-131859800 (-)
LP/J MGP_LPJ_G0031322
protein coding gene Chr6:139662491-139684604 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031228
protein coding gene Chr6:152727081-152744036 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031892
protein coding gene Chr6:137910318-137928614 (-)
PWK/PhJ MGP_PWKPhJ_G0030215
protein coding gene Chr6:131424803-131442588 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030039
protein coding gene Chr6:136080325-136098237 (-)
WSB/EiJ MGP_WSBEiJ_G0030581
protein coding gene Chr6:138536829-138555686 (-)



Homology
more
  • Human Ortholog
    GSG1, germ cell associated 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    GSG1, germ cell associated 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 83445
    neXtProt AC: NX_Q2KHT4
    UniProt: Q2KHT4

  • Chr Location
    12p13.1; chr12:13083537-13103720 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 7745
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: GSG1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 14840 NCBI Gene Model | MGI Sequence Detail 17008 C57BL/6J ±  kb
transcript NM_010352 RefSeq | MGI Sequence Detail 1448 Not Specified  
polypeptide Q8R1W2 UniProt | EBI | MGI Sequence Detail 324 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 4
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:21735 Tanaka H, et al., Isolation and characterization of cDNA clones specifically expressed in testicular germ cells. FEBS Lett. 1994 Nov 21;355(1):4-10
  • Latest
    J:240687 Park KU, et al., Gsg1, Trnp1, and Tmem215 Mark Subpopulations of Bipolar Interneurons in the Mouse Retina. Invest Ophthalmol Vis Sci. 2017 Feb 01;58(2):1137-1150

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory