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Cdr2 Gene Detail
Summary
  • Symbol
    Cdr2
  • Name
    cerebellar degeneration-related 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1100885
    NCBI Gene: 12585
  • Gene Overview
    MyGene.info: CDR2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:120957036-120982312 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 65.04 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    174 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1100885
protein coding gene Chr7:120957036-120982312 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032936
protein coding gene Chr7:124971217-124996524 (-)
A/J MGP_AJ_G0032919
protein coding gene Chr7:121707186-121734038 (-)
AKR/J MGP_AKRJ_G0032851
protein coding gene Chr7:124834603-124859876 (-)
BALB/cJ MGP_BALBcJ_G0032924
protein coding gene Chr7:121428394-121453665 (-)
C3H/HeJ MGP_C3HHeJ_G0032634
protein coding gene Chr7:124745727-124771002 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033430
protein coding gene Chr7:129918045-129945471 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030402
protein coding gene Chr7:123087161-123112639 (-)
CAST/EiJ MGP_CASTEiJ_G0031961
protein coding gene Chr7:116463484-116535837 (-)
CBA/J MGP_CBAJ_G0032607
protein coding gene Chr7:134240315-134265574 (-)
DBA/2J MGP_DBA2J_G0032759
protein coding gene Chr7:119744957-119771495 (-)
FVB/NJ MGP_FVBNJ_G0032712
protein coding gene Chr7:119605475-119631053 (-)
LP/J MGP_LPJ_G0032853
protein coding gene Chr7:126416490-126441769 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032744
protein coding gene Chr7:135710706-135735982 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033450
protein coding gene Chr7:123821177-123846458 (-)
PWK/PhJ MGP_PWKPhJ_G0031670
protein coding gene Chr7:112672425-112699339 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031516
protein coding gene Chr7:110584976-110610331 (-)
WSB/EiJ MGP_WSBEiJ_G0032075
protein coding gene Chr7:124752990-124778697 (-)



Homology
more
  • Human Ortholog
    CDR2, cerebellar degeneration related protein 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDR2, cerebellar degeneration related protein 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDR62, Yo
  • Links
    NCBI Gene ID: 1039
    neXtProt AC: NX_Q01850
    UniProt: Q01850

  • Chr Location
    16p12.2; chr16:22345936-22374617 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 7262
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDR2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Mice homozygous for a reporter allele are viable, fertile, and overtly normal.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12585 NCBI Gene Model | MGI Sequence Detail 25277 C57BL/6J ±  kb
transcript NM_001354986 RefSeq | MGI Sequence Detail 2546 C57BL/6  
polypeptide P97817 UniProt | EBI | MGI Sequence Detail 455 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 88
    cDNA 88

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141845
References
more
  • Summaries
    All 29
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:40255 Fletcher CF, et al., Mouse chromosomal locations of nine genes encoding homologs of human paraneoplastic neurologic disorder antigens. Genomics. 1997 Oct 15;45(2):313-9
  • Latest
    J:260034 Blachere NE, et al., T cells presenting viral antigens or autoantigens induce cytotoxic T cell anergy. JCI Insight. 2017 Nov 2;2(21)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory