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Vps4b
Gene Detail
 Symbol
Name
ID
Vps4b
vacuolar protein sorting 4b (yeast)
MGI:1100499
Synonyms 8030489C12Rik, Skd1
Feature Type protein coding gene
Genetic Map
Chromosome 1
50.10 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr1:106764071-106796728 bp, - strand
From VEGA annotation of GRCm38

  32658 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37976  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: AAA ATPase, Vps4 type
Gene Tree: Vps4b

Human
homologs
Human Homolog VPS4B, vacuolar protein sorting 4 homolog B (S. cerevisiae)
NCBI Gene ID 9525
neXtProt AC  NX_O75351
Human Synonyms  SKD1, SKD1B, VPS4-2
Human Chr (Location)  18q21.33; chr18:63389190-63422519 (-)  GRCh38
Alleles
and
phenotypes
All alleles(2) : Gene trapped(2)
Gene Ontology
(GO)
classifications
All GO classifications: (34 annotations)
Process ATP catabolic process, cell cycle, ...
Component cytoplasm, cytosol, ...
Function ATPase activity, ATP binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
cDNA source data(13)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000021646 (Evidence)
Ensembl Gene ModelENSMUSG00000009907 (Evidence)
Entrez Gene20479 (Evidence)
DFCITC1572177, TC1597625, TC1610197, TC1717233
DoTSDT.493688, DT.94251962, DT.97332576
NIA Mouse Gene IndexU021662, U326542
EC3.6.4.6
PDB2ZAM, 2ZAN, 2ZAO
Consensus CDS ProjectCCDS15211.1
International Mouse Knockout Project StatusVps4b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021646 VEGA Gene Model | MGI Sequence Detail 32658 C57BL/6J ±  kb
transcript OTTMUST00000051389 VEGA | MGI Sequence Detail 4633 Not Applicable 
polypeptide OTTMUSP00000024168 VEGA | MGI Sequence Detail 444 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(2) UniProt(4)
Polymorphisms SNPs within 2kb(192 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR003960 ATPase, AAA-type, conserved site
InterPro IPR003959 ATPase, AAA-type, core
InterPro IPR007330 MIT
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR015415 Vps4 oligomerisation, C-terminal
Protein Ontology PR:000017343 vacuolar protein sorting-associated protein 4B
References (Earliest) J:20181 Perier F, et al., Identification of a novel mammalian member of the NSF/CDC48p/Pas1p/TBP-1 family through heterologous expression in yeast. FEBS Lett. 1994 Sep 5;351(2):286-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(35)
Other
accession IDs
MGI:2442405

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory