About   Help   FAQ
Ssr4 Gene Detail
Summary
  • Symbol
    Ssr4
  • Name
    signal sequence receptor, delta
  • Synonyms
    Trap
  • Feature Type
    protein coding gene
  • IDs
    MGI:1099464
    NCBI Gene: 20832
  • Gene Overview
    MyGene.info: SSR4
Location & Maps
more
  • Sequence Map
    ChrX:73787062-73790830 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3769 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 37.41 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CDG1Y, TRAPD
  • Links
    NCBI Gene ID: 6748
    neXtProt AC: NX_P51571

  • Chr Location
    Xq28; chrX:153794175-153798512 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human SSR4 associations

Human Disease Mouse Models
       Congenital Disorder of Glycosylation, Type Iy; CDG1Y   OMIM: 300934
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    14
  • Gene trapped
    12
  • Targeted
    2
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018078 VEGA Gene Model | MGI Sequence Detail 3769 C57BL/6J ±  kb
transcript OTTMUST00000043630 VEGA | MGI Sequence Detail 765 Not Applicable  
polypeptide OTTMUSP00000019606 VEGA | MGI Sequence Detail 172 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    34 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000015662 translocon-associated protein subunit delta
  • InterPro Domains
    IPR008855 Translocon-associated
Molecular
Reagents
less
  • All nucleic 160
    Genomic 1
    cDNA 158
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2148027, MGI:2148055
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:42694 Holthuis JC, et al., Translocon-associated protein TRAP delta and a novel TRAP-like protein are coordinately expressed with pro-opiomelanocortin in Xenopus intermediate pituitary. Biochem J. 1995 Nov 15;312(Pt 1):205-13
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/23/2016
MGI 6.05
The Jackson Laboratory