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Ssr4 Gene Detail
Summary
  • Symbol
    Ssr4
  • Name
    signal sequence receptor, delta
  • Synonyms
    Trap
  • Feature Type
    protein coding gene
  • IDs
    MGI:1099464
    NCBI Gene: 20832
  • Gene Overview
    MyGene.info: SSR4
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:73787028-73790828 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 37.41 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    34 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1099464
protein coding gene ChrX:73787028-73790830 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035821
protein coding gene ChrX:69562318-69566120 (+)
A/J MGP_AJ_G0035802
protein coding gene ChrX:69759289-69763091 (+)
AKR/J MGP_AKRJ_G0035727
protein coding gene ChrX:71579926-71583728 (+)
BALB/cJ MGP_BALBcJ_G0035787
protein coding gene ChrX:68790638-68794440 (+)
C3H/HeJ MGP_C3HHeJ_G0035492
protein coding gene ChrX:70035881-70039683 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036317
protein coding gene ChrX:71692866-71696668 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033161
protein coding gene ChrX:68789905-68793712 (+)
CAST/EiJ MGP_CASTEiJ_G0034783
protein coding gene ChrX:55381885-55385683 (+)
CBA/J MGP_CBAJ_G0035467
protein coding gene ChrX:73671816-73675618 (+)
DBA/2J MGP_DBA2J_G0035624
protein coding gene ChrX:69217430-69221232 (+)
FVB/NJ MGP_FVBNJ_G0035568
protein coding gene ChrX:68548499-68552301 (+)
LP/J MGP_LPJ_G0035709
protein coding gene ChrX:70344893-70348695 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035606
protein coding gene ChrX:76241397-76245204 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036339
protein coding gene ChrX:69383671-69387473 (+)
PWK/PhJ MGP_PWKPhJ_G0034482
protein coding gene ChrX:53397738-53401536 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034316
protein coding gene ChrX:56285148-56288946 (+)
WSB/EiJ MGP_WSBEiJ_G0034924
protein coding gene ChrX:68657543-68661344 (+)



Homology
more
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDG1Y, TRAPD
  • Links
    NCBI Gene ID: 6748
    neXtProt AC: NX_P51571
    UniProt: P51571

  • Chr Location
    Xq28; chrX:153794175-153798512 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human SSR4 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 20832 NCBI Gene Model | MGI Sequence Detail 3801 C57BL/6J ±  kb
transcript NM_001358213 RefSeq | MGI Sequence Detail 925 C57BL/6  
polypeptide Q62186 UniProt | EBI | MGI Sequence Detail 172 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR008855 Translocon-associated
Molecular
Reagents
less
  • All nucleic 161
    Genomic 1
    cDNA 159
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2148027, MGI:2148055
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:42694 Holthuis JC, et al., Translocon-associated protein TRAP delta and a novel TRAP-like protein are coordinately expressed with pro-opiomelanocortin in Xenopus intermediate pituitary. Biochem J. 1995 Nov 15;312(Pt 1):205-13
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory