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Commd2
Gene Detail
Symbol

Name
ID
Commd2
COMM domain containing 2
MGI:1098806
Synonyms
1190017G07Rik, D3Ertd176e, HSPC042
Feature Type
protein coding gene
Genetic Map
Chromosome 3
27.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:57642904-57651715 bp, - strand
From VEGA annotation of GRCm38

  8812 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9381  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COMMD2
Gene Tree: Commd2

Human
homologs
COMMD2, COMM domain containing 2
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 51122
neXtProt AC: NX_Q86X83

Human Synonyms: HSPC042

Human Chr (Location): 3q25.1; chr3:149738470-149752510 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(2) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Commd2 interacts with 333 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component cytoplasm
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(66)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase commd2 ; ZFIN commd2    NEW 
Molecular
reagents
All nucleic(67) cDNA(66) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000029283 (Evidence)
Ensembl Gene Model ENSMUSG00000036513 (Evidence)
Entrez Gene 52245 (Evidence)
UniGene 21901
DFCI TC1575879, TC1617165, TC1600778
DoTS DT.493969, DT.101382211
NIA Mouse Gene Index U024073
Consensus CDS Project CCDS17362.1
International Mouse Phenotyping Consortium Status Commd2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029283 VEGA Gene Model | MGI Sequence Detail 8812 C57BL/6J ±  kb
transcript OTTMUST00000072569 VEGA | MGI Sequence Detail 4415 Not Applicable 
polypeptide OTTMUSP00000037393 VEGA | MGI Sequence Detail 199 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(161 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017920 COMM domain
InterPro IPR009886 HCaRG
Protein Ontology PR:000031978 COMM domain-containing protein 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1916178, MGI:2147842

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory