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Commd2 Gene Detail
Summary
  • Symbol
    Commd2
  • Name
    COMM domain containing 2
  • Synonyms
    1190017G07Rik, D3Ertd176e, HSPC042
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098806
    NCBI Gene: 52245
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:57644349-57651684 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 27.94 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    158 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098806
protein coding gene Chr3:57644349-57651715 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027230
protein coding gene Chr3:56444050-56452022 (-)
A/J MGP_AJ_G0027190
protein coding gene Chr3:54692538-54701085 (-)
AKR/J MGP_AKRJ_G0027160
protein coding gene Chr3:55828582-55835773 (-)
BALB/cJ MGP_BALBcJ_G0027203
protein coding gene Chr3:54519494-54526911 (-)
C3H/HeJ MGP_C3HHeJ_G0026946
protein coding gene Chr3:56017310-56026351 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027649
protein coding gene Chr3:58534923-58548604 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0026398
protein coding gene Chr3:56182082-56190708 (-)
CBA/J MGP_CBAJ_G0026922
protein coding gene Chr3:60466672-60473793 (-)
DBA/2J MGP_DBA2J_G0027056
protein coding gene Chr3:54191907-54199226 (-)
FVB/NJ MGP_FVBNJ_G0027024
protein coding gene Chr3:53169360-53177705 (-)
LP/J MGP_LPJ_G0027168
protein coding gene Chr3:57187058-57195244 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027042
protein coding gene Chr3:64557597-64566161 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027707
protein coding gene Chr3:55760256-55768769 (-)
PWK/PhJ MGP_PWKPhJ_G0026130
protein coding gene Chr3:53843703-53851006 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025943
protein coding gene Chr3:55446798-55454839 (-)
WSB/EiJ MGP_WSBEiJ_G0026472
protein coding gene Chr3:55847363-55857733 (-)



Homology
more
  • Human Ortholog
    COMMD2, COMM domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COMMD2, COMM domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSPC042
  • Links
    NCBI Gene ID: 51122
    neXtProt AC: NX_Q86X83
    UniProt: Q86X83

  • Chr Location
    3q25.1; chr3:149737160-149752507 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9381
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: COMMD2
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52245 NCBI Gene Model | MGI Sequence Detail 7336 C57BL/6J ±  kb
transcript NM_175095 RefSeq | MGI Sequence Detail 2961 C57BL/6  
polypeptide Q8BXC6 UniProt | EBI | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 68
    cDNA 67
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916178, MGI:2147842
References
more
  • Summaries
    All 34
    Diseases 1
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/13/2020
MGI 6.16
The Jackson Laboratory