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Coa3 Gene Detail
Summary
  • Symbol
    Coa3
  • Name
    cytochrome C oxidase assembly factor 3
  • Synonyms
    1810033A19Rik, Ccdc56, D11Ertd99e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098757
    NCBI Gene: 52469
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:101277970-101278948 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 64.56 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098757
protein coding gene Chr11:101277968-101279114 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019191
protein coding gene Chr11:104121127-104122273 (-)
A/J MGP_AJ_G0019159
protein coding gene Chr11:99744957-99746106 (-)
AKR/J MGP_AKRJ_G0019128
protein coding gene Chr11:102845742-102846888 (-)
BALB/cJ MGP_BALBcJ_G0019133
protein coding gene Chr11:100231907-100233053 (-)
C3H/HeJ MGP_C3HHeJ_G0018942
protein coding gene Chr11:103020021-103021167 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019582
protein coding gene Chr11:107371648-107372794 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017208
protein coding gene Chr11:97158310-97159471 (-)
CAST/EiJ MGP_CASTEiJ_G0018496
protein coding gene Chr11:104008437-104009584 (-)
CBA/J MGP_CBAJ_G0018911
protein coding gene Chr11:111811164-111812310 (-)
DBA/2J MGP_DBA2J_G0019023
protein coding gene Chr11:99274081-99275227 (-)
FVB/NJ MGP_FVBNJ_G0019013
protein coding gene Chr11:98820313-98821459 (-)
LP/J MGP_LPJ_G0019092
protein coding gene Chr11:104666136-104667282 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019044
protein coding gene Chr11:111366654-111367800 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019620
protein coding gene Chr11:103172840-103173986 (-)
PWK/PhJ MGP_PWKPhJ_G0018259
protein coding gene Chr11:100328519-100329665 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018051
protein coding gene Chr11:102910821-102911964 (-)
WSB/EiJ MGP_WSBEiJ_G0018545
protein coding gene Chr11:103169113-103170259 (-)



Homology
more
  • Human Ortholog
    COA3, cytochrome c oxidase assembly factor 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    COA3, cytochrome c oxidase assembly factor 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCDC56, COX25, HSPC009, MITRAC12
  • Links
    NCBI Gene ID: 28958
    neXtProt AC: NX_Q9Y2R0
    UniProt: Q9Y2R0

  • Chr Location
    17q21.2; chr17:42797618-42798725 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 69156
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: COA3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52469 NCBI Gene Model | MGI Sequence Detail 979 C57BL/6J ±  kb
transcript NM_026618 RefSeq | MGI Sequence Detail 718 C57BL/6  
polypeptide Q9D2R6 UniProt | EBI | MGI Sequence Detail 108 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000029331 coiled-coil domain-containing protein 56
  • InterPro Domains
    IPR018628 Cytochrome c oxidase assembly factor 3, mitochondrial
Molecular
Reagents
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  • All nucleic 103
    cDNA 102
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1915463
References
more
  • Summaries
    All 32
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory