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Slc46a1 Gene Detail
Summary
  • Symbol
    Slc46a1
  • Name
    solute carrier family 46, member 1
  • Synonyms
    1110002C08Rik, D11Ertd18e, HCP1, heme carrier protein 1, PCFT
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098733
    NCBI Gene: 52466
  • Gene Overview
    MyGene.info: SLC46A1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:78465701-78471945 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 46.74 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    28 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098733
protein coding gene Chr11:78465697-78472059 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018780
protein coding gene Chr11:79478991-79485352 (+)
A/J MGP_AJ_G0018746
protein coding gene Chr11:76436409-76442771 (+)
AKR/J MGP_AKRJ_G0018716
protein coding gene Chr11:78738801-78745163 (+)
BALB/cJ MGP_BALBcJ_G0018720
protein coding gene Chr11:76840070-76846432 (+)
C3H/HeJ MGP_C3HHeJ_G0018533
protein coding gene Chr11:78786674-78793037 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019171
protein coding gene Chr11:81950028-81956390 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016806
protein coding gene Chr11:73408270-73413575 (+)
CAST/EiJ MGP_CASTEiJ_G0018087
protein coding gene Chr11:79242928-79249302 (+)
CBA/J MGP_CBAJ_G0018504
protein coding gene Chr11:85557237-85563600 (+)
DBA/2J MGP_DBA2J_G0018612
protein coding gene Chr11:76009620-76015982 (+)
FVB/NJ MGP_FVBNJ_G0018602
protein coding gene Chr11:75598534-75604896 (+)
LP/J MGP_LPJ_G0018683
protein coding gene Chr11:79997351-80003712 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018628
protein coding gene Chr11:85924203-85930565 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019211
protein coding gene Chr11:78987742-78994104 (+)
PWK/PhJ MGP_PWKPhJ_G0017858
protein coding gene Chr11:76807927-76814300 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017649
protein coding gene Chr11:78598852-78605246 (+)
WSB/EiJ MGP_WSBEiJ_G0018140
protein coding gene Chr11:78817276-78823636 (+)



Homology
more
  • Human Ortholog
    SLC46A1, solute carrier family 46 member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC46A1, solute carrier family 46 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    G21, HCP1, PCFT
  • Links
    NCBI Gene ID: 113235
    neXtProt AC: NX_Q96NT5
    UniProt: Q96NT5

  • Chr Location
    17q11.2; chr17:28394642-28406630 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotypes from 2 alleles in 2 genetic backgrounds
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit increased circulating and liver levels of N-homocysteine and total homocysteine.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 52466 NCBI Gene Model | MGI Sequence Detail 6245 C57BL/6J ±  kb
    transcript NM_026740 RefSeq | MGI Sequence Detail 1990 C57BL/6  
    polypeptide Q6PEM8 UniProt | EBI | MGI Sequence Detail 459 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 56
      cDNA 53
      Primer pair 3

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1915739
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 4
      Gene Ontology 5
      Phenotypes 17
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory