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Gypc
Gene Detail
Symbol

Name
ID
Gypc
glycophorin C
MGI:1098566
Synonyms
0610037F22Rik, Cd236r, Gerbich antigen
Feature Type
protein coding gene
Genetic Map
Chromosome 18
18.05 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr18:32528322-32560034 bp, - strand
From VEGA annotation of GRCm38

  31713 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128415  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chicken

HCOP human homology predictions: GYPC
Gene Tree: Gypc

Human
homologs
GYPC, glycophorin C (Gerbich blood group)
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 2995
neXtProt AC: NX_P04921

Human Synonyms: CD236, CD236R, GE, GPC, GPD, GYPD, PAS-2, PAS-2'

Human Chr (Location): 2q14-q21; chr2:126655935-126696675 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human GYPC

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Interactions
Gypc interacts with 173 markers (Mir17, Mir18b, Mir19a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process biological_process
Component cortical cytoskeleton, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (52)    Tissues (4)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 52
cDNA source data(41)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gypc    NEW 
Molecular
reagents
All nucleic(41) cDNA(41)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000037029 (Evidence)
Ensembl Gene Model ENSMUSG00000090523 (Evidence)
Entrez Gene 71683 (Evidence)
UniGene 292145
DFCI TC1576706, TC1605933
DoTS DT.101353301, DT.532039
NIA Mouse Gene Index U038290
Consensus CDS Project CCDS57118.1
International Mouse Phenotyping Consortium Status Gypc
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037029 VEGA Gene Model | MGI Sequence Detail 31713 C57BL/6J ±  kb
transcript OTTMUST00000095233 VEGA | MGI Sequence Detail 2180 Not Applicable 
polypeptide OTTMUSP00000053128 VEGA | MGI Sequence Detail 95 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(5) UniProt(4)
Polymorphisms
SNPs within 2kb(240 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003585 Neurexin/syndecan/glycophorin C
Protein Ontology PR:000001462 glycophorin-C
References
(Earliest) J:58415 Dangond F, et al., Cloning and expression of a murine histone deacetylase 3 (mHdac3) cDNA and mapping to a region of conserved synteny between murine chromosome 18 and human chromosome 5. Mol Cell Biol Res Commun. 1999 Aug;2(2):91-6
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1918933

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory