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Ints9 Gene Detail
Summary
  • Symbol
    Ints9
  • Name
    integrator complex subunit 9
  • Synonyms
    D14Ertd231e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098533
    NCBI Gene: 210925
  • Gene Overview
    MyGene.info: INTS9
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:64950045-65039832 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 33.81 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    594 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098533
protein coding gene Chr14:64950045-65039835 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021475
protein coding gene Chr14:59531800-59627381 (+)
A/J MGP_AJ_G0021434
protein coding gene Chr14:58166965-58262005 (+)
AKR/J MGP_AKRJ_G0021410
protein coding gene Chr14:60193306-60283346 (+)
BALB/cJ MGP_BALBcJ_G0021440
protein coding gene Chr14:58113402-58206598 (+)
C3H/HeJ MGP_C3HHeJ_G0021217
protein coding gene Chr14:59839698-59931041 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021879
protein coding gene Chr14:62311464-62403469 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019419
protein coding gene Chr14:56103013-56195385 (+)
CAST/EiJ MGP_CASTEiJ_G0020734
protein coding gene Chr14:56320330-56416071 (+)
CBA/J MGP_CBAJ_G0021184
protein coding gene Chr14:64176922-64278858 (+)
DBA/2J MGP_DBA2J_G0021307
protein coding gene Chr14:57826292-57914539 (+)
FVB/NJ MGP_FVBNJ_G0021286
protein coding gene Chr14:57222066-57316377 (+)
LP/J MGP_LPJ_G0021382
protein coding gene Chr14:60571493-60664358 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021315
protein coding gene Chr14:63327093-63419612 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021902
protein coding gene Chr14:59366856-59462772 (+)
PWK/PhJ MGP_PWKPhJ_G0020478
protein coding gene Chr14:54531981-54619392 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020311
protein coding gene Chr14:55335982-55423535 (+)
WSB/EiJ MGP_WSBEiJ_G0020787
protein coding gene Chr14:59685718-59776153 (+)



Homology
more
  • Human Ortholog
    INTS9, integrator complex subunit 9
  • Vertebrate Orthologs
    8
  • Human Ortholog
    INTS9, integrator complex subunit 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CPSF2L, INT9, RC74
  • Links
    NCBI Gene ID: 55756
    neXtProt AC: NX_Q9NV88
    UniProt: Q9NV88

  • Chr Location
    8p21.1; chr8:28767658-28890226 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021975 Ensembl Gene Model | MGI Sequence Detail 89788 C57BL/6J ±  kb
transcript ENSMUST00000043914 Ensembl | MGI Sequence Detail 2674 Not Applicable  
polypeptide ENSMUSP00000045552 Ensembl | MGI Sequence Detail 687 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR022712 Beta-Casp domain
    IPR027074 Integrator complex subunit 9
    IPR001279 Metallo-beta-lactamase
    IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
Molecular
Reagents
less
  • All nucleic 72
    cDNA 71
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2387175
References
more
  • Summaries
    All 33
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory