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Rps5
Gene Detail
Symbol

Name
ID
Rps5
ribosomal protein S5
MGI:1097682
Synonyms
S5 ribosomal protein
Feature Type
protein coding gene
Genetic Map
Chromosome 7
7.69 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:12922290-12926686 bp, + strand
From VEGA annotation of GRCm38

  4397 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:783  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RPS5
Protein SuperFamily: ribosomal protein, S7p/S7a/S5e/organellar S7 types
Gene Tree: Rps5

Human
homologs
RPS5, ribosomal protein S5
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 6193
neXtProt AC: NX_P46782

Human Synonyms: S5

Human Chr (Location): 19q13.4; chr19:58387269-58394804 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(47) : Gene trapped(43) Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Rps5 interacts with 9 markers (Mir103-1, Mir103-2, Mir107, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process regulation of translational fidelity, translation
Component cytosolic small ribosomal subunit, extracellular exosome, ...
Function mRNA binding, poly(A) RNA binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (204)    Tissues (63)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 188
RT-PCR 16
cDNA source data(1063)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rps5    NEW 
Molecular
reagents
All nucleic(1064) cDNA(1063) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000023212 (Evidence)
Ensembl Gene Model ENSMUSG00000012848 (Evidence)
Entrez Gene 20103 (Evidence)
UniGene 5291
DFCI TC1573679
DoTS DT.101175047, DT.101209547, DT.101315131, DT.101315143, DT.101741205, DT.94397065
NIA Mouse Gene Index U007680
Consensus CDS Project CCDS20817.1
International Mouse Phenotyping Consortium Status Rps5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023212 VEGA Gene Model | MGI Sequence Detail 4397 C57BL/6J ±  kb
transcript OTTMUST00000056175 VEGA | MGI Sequence Detail 794 Not Applicable 
polypeptide OTTMUSP00000026966 VEGA | MGI Sequence Detail 204 Not Applicable 

For the selected sequences
All sequences(73) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(70 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000235 Ribosomal protein S5/S7
InterPro IPR005716 Ribosomal protein S5/S7, eukaryotic/archaeal
InterPro IPR020606 Ribosomal protein S7, conserved site
InterPro IPR023798 Ribosomal protein S7 domain
Protein Ontology PR:000014280 40S ribosomal protein S5
References
(Earliest) J:40931 Vanegas N, et al., Cloning, sequencing and expression in MEL cells of a cDNA encoding the mouse ribosomal protein S5. Biochim Biophys Acta. 1997 Jun 5;1357(1):1-4
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(42)
Other
accession IDs
MGI:2145925

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory