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Calu Gene Detail
Summary
  • Symbol
    Calu
  • Name
    calumenin
  • Synonyms
    9530075H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1097158
    NCBI Gene: 12321
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:29348105-29376674 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 12.36 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    147 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1097158
protein coding gene Chr6:29348068-29377109 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030520
protein coding gene Chr6:27135635-27166421 (+)
A/J MGP_AJ_G0030493
protein coding gene Chr6:25989032-26018076 (+)
AKR/J MGP_AKRJ_G0030420
protein coding gene Chr6:26847625-26877829 (+)
BALB/cJ MGP_BALBcJ_G0030503
protein coding gene Chr6:26144580-26173474 (+)
C3H/HeJ MGP_C3HHeJ_G0030216
protein coding gene Chr6:26845743-26874673 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030957
protein coding gene Chr6:27921977-27951958 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028168
protein coding gene Chr6:24196562-24225324 (+)
CAST/EiJ MGP_CASTEiJ_G0029618
protein coding gene Chr6:26642682-26674697 (+)
CBA/J MGP_CBAJ_G0030194
protein coding gene Chr6:28963455-28995686 (+)
DBA/2J MGP_DBA2J_G0030338
protein coding gene Chr6:25931247-25960431 (+)
FVB/NJ MGP_FVBNJ_G0030292
protein coding gene Chr6:25687274-25716721 (+)
LP/J MGP_LPJ_G0030425
protein coding gene Chr6:27269731-27300794 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030328
protein coding gene Chr6:31481875-31513965 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030987
protein coding gene Chr6:26721165-26752744 (+)
PWK/PhJ MGP_PWKPhJ_G0029332
protein coding gene Chr6:25467158-25496922 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029168
protein coding gene Chr6:26441082-26469793 (+)
WSB/EiJ MGP_WSBEiJ_G0029694
protein coding gene Chr6:26695177-26724779 (+)



Homology
more
  • Human Ortholog
    CALU, calumenin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CALU, calumenin
  • Links
    NCBI Gene ID: 813
    neXtProt AC: NX_O43852
    UniProt: O43852

  • Chr Location
    7q32.1; chr7:128739292-128773423 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12321 NCBI Gene Model | MGI Sequence Detail 28570 C57BL/6J ±  kb
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 449
      cDNA 444
      Primer pair 4
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2442053
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 5
      Gene Ontology 6
      Phenotypes 7
    • Earliest
      J:154091 Gogstad GO, et al., Characterization of the proteins of isolated human platelet alpha-granules. Evidence for a separate alpha-granule-pool of the glycoproteins IIb and IIIa. Biochim Biophys Acta. 1981 Sep 29;670(2):150-62
    • Latest
      J:184403 Vasiljevic M, et al., Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain. Neuroscience. 2012 Jan 27;202:29-41

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    05/10/2022
    MGI 6.19
    The Jackson Laboratory