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Hsd3b6 Gene Detail
Summary
  • Symbol
    Hsd3b6
  • Name
    hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
  • Synonyms
    3beta-HSD VI
  • Feature Type
    protein coding gene
  • IDs
    MGI:109598
    NCBI Gene: 15497
  • Member of
    Hsd3b cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:98805504-98814443 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 42.88 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    86 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109598
protein coding gene Chr3:98805504-98814443 (-)
129S1/SvImJ no annotation
A/J no annotation
AKR/J MGP_AKRJ_G0027584
protein coding gene Chr3:98987256-99000332 (-)
BALB/cJ MGP_BALBcJ_G0027631
protein coding gene Chr3:96483336-96494839 (-)
C3H/HeJ MGP_C3HHeJ_G0027360
protein coding gene Chr3:99322644-99334412 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028074
protein coding gene Chr3:103551824-103563966 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025415
protein coding gene Chr3:92740439-92996947 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0027335
protein coding gene Chr3:107239828-107248656 (-)
DBA/2J MGP_DBA2J_G0027478
protein coding gene Chr3:95948233-95958036 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0027585
protein coding gene Chr3:101214000-101223878 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027474
protein coding gene Chr3:113235486-113326315 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026364
protein coding gene Chr3:96635073-96706925 (-)
WSB/EiJ MGP_WSBEiJ_G0026895
protein coding gene Chr3:98995366-99123567 (-)



Homology
more
  • Human Ortholog
    HSD3B1, hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
  • Vertebrate Orthologs
    6
  • Human Ortholog
    HSD3B1, hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    3BETAHSD, HSD3B, HSDB3, HSDB3A, SDR11E1
  • Links
    NCBI Gene ID: 3283
    neXtProt AC: NX_P14060
    UniProt: P14060

  • Chr Location
    1p12; chr1:119507112-119515060 (+)  GRCh38.p7

  • Human Ortholog
    HSD3B2, hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
    Orthology source: HGNC
  • Synonyms
    HSD3B, HSDB, SDR11E2
  • Links
    NCBI Gene ID: 3284
    neXtProt AC: NX_P26439
    UniProt: P26439

  • Chr Location
    1p12; chr1:119414931-119423039 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human HSD3B2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hsd3b6
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 15497 NCBI Gene Model | MGI Sequence Detail 8940 C57BL/6J ±  kb
transcript NM_013821 RefSeq | MGI Sequence Detail 1821 C57BL/6  
polypeptide O35469 UniProt | EBI | MGI Sequence Detail 373 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 32
    Genomic 1
    cDNA 25
    Primer pair 6

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-39597, MGI:2140104
References
more
  • Summaries
    All 44
    Developmental Gene Expression 14
    Diseases 1
    Gene Ontology 6
    Phenotypes 3
  • Earliest
    J:33962 Clarke TR, et al., Isolation and characterization of several members of the murine Hsd3b gene family. DNA Cell Biol. 1996 May;15(5):387-99
  • Latest
    J:245773 Paikari A, et al., The eutheria-specific miR-290 cluster modulates placental growth and maternal-fetal transport. Development. 2017 Oct 15;144(20):3731-3743

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory