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S100a13
Gene Detail
Symbol

Name
ID
S100a13
S100 calcium binding protein A13
MGI:109581
Feature Type
protein coding gene
Genetic Map
Chromosome 3
39.24 cM, cytoband F1-F2
Detailed Genetic Map ± 1 cM


Mapping data(6)
Sequence Map
Chr3:90514435-90524581 bp, + strand
From VEGA annotation of GRCm38

  10147 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7523  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken

Protein SuperFamily: S-100 protein
Gene Tree: S100a13

Human
homologs
Human Homolog S100A13, S100 calcium binding protein A13
NCBI Gene ID 6284
neXtProt AC  NX_Q99584
Human Chr (Location)  1q21; chr1:153618799-153634092 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(24) : Gene trapped(22) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
S100a13 interacts with 15 markers (Mir208a, Mir208b, Mir302c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (23 annotations)
Process cytokine secretion, interleukin-1 alpha secretion, ...
Component cytoplasm, cytosol, ...
Function calcium ion binding, copper ion binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (2 records)
cDNA source data(42)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(44) Genomic(2) cDNA(42)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000022110 (Evidence)
Ensembl Gene ModelENSMUSG00000042312 (Evidence)
Entrez Gene20196 (Evidence)
UniGene6523
DFCITC1581516
DoTSDT.101256007, DT.492883
NIA Mouse Gene IndexU003496
PDB2CXJ
Consensus CDS ProjectCCDS38504.2
International Mouse Knockout Project StatusS100a13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022110 VEGA Gene Model | MGI Sequence Detail 10147 C57BL/6J ±  kb
transcript OTTMUST00000052486 VEGA | MGI Sequence Detail 715 Not Applicable 
polypeptide OTTMUSP00000024894 VEGA | MGI Sequence Detail 160 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011992 EF-hand-like domain
InterPro IPR013787 S100/CaBP-9k-type, calcium binding, subdomain
Protein Ontology PR:000014406 protein S100-A13
References
(Earliest) J:36095 Wicki R, et al., Characterization of the human and mouse cDNAs coding for S100A13, a new member of the S100 protein family. Biochem Biophys Res Commun. 1996 Oct 14;227(2):594-9
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGD-MRK-39580

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory