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S100a13 Gene Detail
Summary
  • Symbol
    S100a13
  • Name
    S100 calcium binding protein A13
  • Feature Type
    protein coding gene
  • IDs
    MGI:109581
    NCBI Gene: 20196
  • Gene Overview
    MyGene.info: S100A13
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:90514435-90524581 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 39.24 cM, cytoband F1-F2
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109581
protein coding gene Chr3:90514435-90524581 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027469
protein coding gene Chr3:90838013-90851726 (+)
A/J MGP_AJ_G0027433
protein coding gene Chr3:87808663-87819669 (+)
AKR/J MGP_AKRJ_G0027398
protein coding gene Chr3:89968324-89979163 (+)
BALB/cJ MGP_BALBcJ_G0027442
protein coding gene Chr3:87762353-87773365 (+)
C3H/HeJ MGP_C3HHeJ_G0027184
protein coding gene Chr3:90131540-90143364 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027888
protein coding gene Chr3:94241694-94253778 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025241
protein coding gene Chr3:83304452-83314597 (+)
CAST/EiJ MGP_CASTEiJ_G0026630
protein coding gene Chr3:90522566-90532293 (+)
CBA/J MGP_CBAJ_G0027159
protein coding gene Chr3:97458582-97468501 (+)
DBA/2J MGP_DBA2J_G0027296
protein coding gene Chr3:87173415-87183614 (+)
FVB/NJ MGP_FVBNJ_G0027264
protein coding gene Chr3:85507804-85517579 (+)
LP/J MGP_LPJ_G0027405
protein coding gene Chr3:91894142-91903896 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027285
protein coding gene Chr3:103690582-103701967 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027947
protein coding gene Chr3:89716837-89730053 (+)
PWK/PhJ MGP_PWKPhJ_G0026364
protein coding gene Chr3:87068921-87081092 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026184
protein coding gene Chr3:88889436-88905344 (+)
WSB/EiJ MGP_WSBEiJ_G0026712
protein coding gene Chr3:90122620-90134844 (+)



Homology
more
  • Human Ortholog
    S100A13, S100 calcium binding protein A13
  • Vertebrate Orthologs
    7
  • Human Ortholog
    S100A13, S100 calcium binding protein A13
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 6284
    neXtProt AC: NX_Q99584
    UniProt: Q99584

  • Chr Location
    1q21.3; chr1:153618799-153634092 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20196 NCBI Gene Model | MGI Sequence Detail 10147 C57BL/6J ±  kb
transcript NM_009113 RefSeq | MGI Sequence Detail 732 C57BL/6  
polypeptide P97352 UniProt | EBI | MGI Sequence Detail 98 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • PDB
  • InterPro Domains
    IPR011992 EF-hand domain pair
    IPR028487 Protein S100-A13
    IPR013787 S100/CaBP-9k-type, calcium binding, subdomain
Molecular
Reagents
less
  • All nucleic 45
    Genomic 2
    cDNA 43

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-39580
References
more
  • Summaries
    All 37
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:36095 Wicki R, et al., Characterization of the human and mouse cDNAs coding for S100A13, a new member of the S100 protein family. Biochem Biophys Res Commun. 1996 Oct 14;227(2):594-9
  • Latest
    J:265604 Naba A, et al., The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol Cell Proteomics. 2012 Apr;11(4):M111.014647

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory