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Taf1a Gene Detail
Summary
  • Symbol
    Taf1a
  • Name
    TATA-box binding protein associated factor, RNA polymerase I, A
  • Synonyms
    mTAFI48
  • Feature Type
    protein coding gene
  • IDs
    MGI:109578
    NCBI Gene: 21339
  • Gene Overview
    MyGene.info: TAF1A
Location & Maps
more
  • Sequence Map
    Chr1:183388985-183410198 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      21214 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TAF1A, TATA-box binding protein associated factor, RNA polymerase I subunit A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TAF1A, TATA-box binding protein associated factor, RNA polymerase I subunit A
    Orthology source: HomoloGene
  • Synonyms
    MGC:17061, RAFI48, SL1, TAFI48
  • Links
    NCBI Gene ID: 9015
    neXtProt AC: NX_Q15573

  • Chr Location
    1q42; chr1:222557902-222590096 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    11
  • Gene trapped
    11
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050605 VEGA Gene Model | MGI Sequence Detail 21214 C57BL/6J ±  kb
transcript OTTMUST00000128308 VEGA | MGI Sequence Detail 1254 Not Applicable  
polypeptide OTTMUSP00000070209 VEGA | MGI Sequence Detail 360 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    77 from dbSNP Build 142
Protein
Information
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  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000016020 TATA box-binding protein-associated factor RNA polymerase I subunit A
  • InterPro Domains
    IPR016629 RNA polymerase I, subunit A (TATA-binding protein-associated factor)
Molecular
Reagents
less
  • All nucleic 44
    cDNA 44

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-39577
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:39012 Heix J, et al., Cloning of murine RNA polymerase I-specific TAF factors: conserved interactions between the subunits of the species-specific transcription initiation factor TIF-IB/SL1. Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):1733-8
  • Latest
    J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory