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Taf1c Gene Detail
Summary
  • Symbol
    Taf1c
  • Name
    TATA-box binding protein associated factor, RNA polymerase I, C
  • Synonyms
    mTAFI95
  • Feature Type
    protein coding gene
  • IDs
    MGI:109576
    NCBI Gene: 21341
  • Gene Overview
    MyGene.info: TAF1C
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:119597974-119605240 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 68.02 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    40 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109576
protein coding gene Chr8:119597871-119605240 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034187
protein coding gene Chr8:122935016-122944235 (-)
A/J MGP_AJ_G0034167
protein coding gene Chr8:117871602-117879691 (-)
AKR/J MGP_AKRJ_G0034094
protein coding gene Chr8:121294924-121303747 (-)
BALB/cJ MGP_BALBcJ_G0034161
protein coding gene Chr8:118076294-118083834 (-)
C3H/HeJ MGP_C3HHeJ_G0033872
protein coding gene Chr8:122022262-122029566 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034681
protein coding gene Chr8:127046173-127054480 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031623
protein coding gene Chr8:110767515-110774212 (-)
CAST/EiJ MGP_CASTEiJ_G0033199
protein coding gene Chr8:121964893-121971745 (-)
CBA/J MGP_CBAJ_G0033845
protein coding gene Chr8:131667866-131677652 (-)
DBA/2J MGP_DBA2J_G0034001
protein coding gene Chr8:117092308-117099634 (-)
FVB/NJ MGP_FVBNJ_G0033944
protein coding gene Chr8:116123879-116130832 (-)
LP/J MGP_LPJ_G0034090
protein coding gene Chr8:123077180-123084495 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033991
protein coding gene Chr8:134110753-134120738 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034699
protein coding gene Chr8:121446979-121455034 (-)
PWK/PhJ MGP_PWKPhJ_G0032901
protein coding gene Chr8:116846573-116853262 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032741
protein coding gene Chr8:120141188-120147862 (-)
WSB/EiJ MGP_WSBEiJ_G0033315
protein coding gene Chr8:122163852-122171769 (-)



Homology
more
  • Human Ortholog
    TAF1C, TATA-box binding protein associated factor, RNA polymerase I subunit C
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TAF1C, TATA-box binding protein associated factor, RNA polymerase I subunit C
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MGC:39976, SL1, TAFI110, TAFI95
  • Links
    NCBI Gene ID: 9013
    neXtProt AC: NX_Q15572
    UniProt: Q15572

  • Chr Location
    16q24.1; chr16:84177847-84187070 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 21341 NCBI Gene Model | MGI Sequence Detail 7267 C57BL/6J ±  kb
transcript NM_021441 RefSeq | MGI Sequence Detail 3255 Not Specified  
polypeptide Q6PDZ2 UniProt | EBI | MGI Sequence Detail 836 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000016022 TATA box-binding protein-associated factor RNA polymerase I subunit C
  • InterPro Domains
    IPR038801 TATA box-binding protein-associated factor RNA polymerase I subunit C
    IPR036322 WD40-repeat-containing domain superfamily
    IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-39575
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:35896 Almendral JM, et al., Expression, cloning and cDNA sequence of a fibroblast serum-regulated gene encoding a putative actin-associated protein (p27). Exp Cell Res. 1989 Apr;181(2):518-30
  • Latest
    J:228011 Okuda H, et al., AF4 uses the SL1 components of RNAP1 machinery to initiate MLL fusion- and AEP-dependent transcription. Nat Commun. 2015;6:8869

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory