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Col19a1
Gene Detail
 Symbol
Name
ID
Col19a1
collagen, type XIX, alpha 1
MGI:1095415
Feature Type protein coding gene
Genetic Map
Chromosome 1
9.99 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr1:24261890-24587472 bp, - strand
From VEGA annotation of GRCm38

  325583 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55608  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Col19a1

Human
homologs
Human Homolog COL19A1, collagen, type XIX, alpha 1
NCBI Gene ID 1310
neXtProt AC  NX_Q14993
Human Synonyms  COL9A1L, D6S228E
Human Chr (Location)  6q12-q13; chr6:69866556-70212454 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Targeted(6)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice display postnatal lethality resulting from impaired swallowing, abnormal esophageal muscle development, and impaired muscle relaxation.
 
Interactions
Col19a1 interacts with 261 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process cell adhesion, cell differentiation, ...
Component collagen trimer, extracellular region, ...
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (254)    Tissues (86)    Images (42)
Theiler Stages: 17, 18, 20, 21, 22, 23, 26, 28
Assay TypeResults
RNA in situ 167
Northern blot 4
Western blot 2
RT-PCR 81
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(18) Genomic(1) cDNA(16) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000021418 (Evidence)
Ensembl Gene ModelENSMUSG00000026141 (Evidence)
Entrez Gene12823 (Evidence)
DFCITC1587615, TC1612078, TC1623872, TC1648704
DoTSDT.110945502, DT.55240775, DT.87057161, DT.94150468, DT.99852403
NIA Mouse Gene IndexU021181
Consensus CDS ProjectCCDS14854.1
International Mouse Knockout Project StatusCol19a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021418 VEGA Gene Model | MGI Sequence Detail 325583 C57BL/6J ±  kb
transcript OTTMUST00000050756 VEGA | MGI Sequence Detail 4266 Not Applicable 
polypeptide OTTMUSP00000023781 VEGA | MGI Sequence Detail 1136 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(14) UniProt(2)
Polymorphisms SNPs within 2kb(2859 from dbSNP Build 137)    SNPs within 2kb including multiple locations(2861)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR008985 Concanavalin A-like lectin/glucanases superfamily
InterPro IPR001791 Laminin G domain
Protein Ontology PR:000005703 collagen alpha-1(XIX) chain
References (Earliest) J:41402 Sumiyoshi H, et al., Ubiquitous expression of the alpha1(XIX) collagen gene (Col19a1) during mouse embryogenesis becomes restricted to a few tissues in the adult organism. J Biol Chem. 1997 Jul 4;272(27):17104-11
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory