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Unc5c Gene Detail
Summary
  • Symbol
    Unc5c
  • Name
    unc-5 netrin receptor C
  • Synonyms
    B130051O18Rik, Unc5h3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1095412
    NCBI Gene: 22253
  • Gene Overview
    MyGene.info: UNC5C
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:141465564-141834924 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 65.57 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4461 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1095412
 protein coding gene Chr3:141465216-141834924 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027938
 protein coding gene Chr3:144616922-144984695 (+)
A/J MGP_AJ_G0027895
 protein coding gene Chr3:139499204-139863732 (+)
AKR/J MGP_AKRJ_G0027861
 protein coding gene Chr3:143187683-143554073 (+)
BALB/cJ MGP_BALBcJ_G0027907
 protein coding gene Chr3:139297886-139668601 (+)
C3H/HeJ MGP_C3HHeJ_G0027637
 protein coding gene Chr3:143531117-143909925 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028351
 protein coding gene Chr3:149676259-150054134 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025689
 protein coding gene Chr3:134747385-135099287 (+)
CAST/EiJ MGP_CASTEiJ_G0027093
 protein coding gene Chr3:143415607-143800388 (+)
CBA/J MGP_CBAJ_G0027614
 protein coding gene Chr3:154803155-155199775 (+)
DBA/2J MGP_DBA2J_G0027753
 protein coding gene Chr3:138605987-138963336 (+)
FVB/NJ MGP_FVBNJ_G0027720
 protein coding gene Chr3:136055446-136415291 (+)
LP/J MGP_LPJ_G0027863
 protein coding gene Chr3:146062671-146437937 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027752
 protein coding gene Chr3:163111584-163523434 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028409
 protein coding gene Chr3:142797304-143162832 (+)
PWK/PhJ MGP_PWKPhJ_G0026817
 protein coding gene Chr3:138415443-138779058 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026644
 protein coding gene Chr3:140879152-141250447 (+)
WSB/EiJ MGP_WSBEiJ_G0027172
 protein coding gene Chr3:143660675-144032342 (+)



Homology
more
  • Human Ortholog
    UNC5C, unc-5 netrin receptor C
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UNC5C, unc-5 netrin receptor C
    Orthology source: HomoloGene, HGNC
  • Synonyms
    UNC5H3
  • Links
    NCBI Gene ID: 8633
    neXtProt AC: NX_O95185
    UniProt: O95185

  • Chr Location
    4q22.3; chr4:95162504-95549210 (-)  GRCh38.p7
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    44 phenotypes from 3 alleles in 5 genetic backgrounds
    1 phenotype from multigenic genotypes
    34 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mutants exhibit ataxia, and reduced size early in life. Mutants exhibit cerebellar defects including reduced size and ectopic cerebellar cells in the midbrain.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    412
  • Tissues
    183
  • cDNA Data
    51
  • Literature Summary
    50
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 22253 NCBI Gene Model | MGI Sequence Detail 369361 C57BL/6J ±  kb
    transcript NM_001293561 RefSeq | MGI Sequence Detail 9355 C57BL/6  
    polypeptide O08747 UniProt | EBI | MGI Sequence Detail 931 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 63
      Genomic 1
      cDNA 55
      Primer pair 5
      Other 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-13803, MGI:2139620, MGI:2442491, MGI:97881
    References
    more
    • Summaries
      All 99
      Developmental Gene Expression 50
      Diseases 1
      Gene Ontology 11
      Phenotypes 34
    • Earliest
      J:28673 Boyer BB, et al., The mitochondrial uncoupling protein gene in brown fat: correlation between DNase I hypersensitivity and expression in transgenic mice. Mol Cell Biol. 1991 Aug;11(8):4147-56
    • Latest
      J:256148 Varadarajan SG, et al., Netrin1 Produced by Neural Progenitors, Not Floor Plate Cells, Is Required for Axon Guidance in the Spinal Cord. Neuron. 2017 May 17;94(4):790-799.e3
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    11/13/2018
    MGI 6.13     		The Jackson Laboratory